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Sodium in PDB 2owd: Crystal Structure of TTHB049 From Thermus Thermophilus HB8

Protein crystallography data

The structure of Crystal Structure of TTHB049 From Thermus Thermophilus HB8, PDB code: 2owd was solved by M.Sugahara, M.Taketa, N.Ono, Y.Matsuura, N.Kunishima, Riken Structuralgenomics/Proteomics Initiative (Rsgi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.71 / 1.65
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 84.176, 92.152, 112.502, 90.00, 90.00, 90.00
R / Rfree (%) 21.2 / 21.8

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of TTHB049 From Thermus Thermophilus HB8 (pdb code 2owd). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of TTHB049 From Thermus Thermophilus HB8, PDB code: 2owd:

Sodium binding site 1 out of 1 in 2owd

Go back to Sodium Binding Sites List in 2owd
Sodium binding site 1 out of 1 in the Crystal Structure of TTHB049 From Thermus Thermophilus HB8


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of TTHB049 From Thermus Thermophilus HB8 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Na1001

b:17.7
occ:1.00
O B:ALA79 2.3 20.3 1.0
O B:GLU81 2.4 19.2 1.0
C B:ALA79 3.2 19.2 1.0
C B:GLU81 3.5 18.7 1.0
N B:GLU81 3.5 18.0 1.0
C B:LEU80 3.9 18.1 1.0
CA B:GLU81 4.0 16.9 1.0
N B:LEU80 4.0 18.6 1.0
CA B:ALA79 4.1 19.0 1.0
CA B:LEU80 4.2 18.6 1.0
CB B:GLU81 4.3 15.4 1.0
O B:GLY78 4.4 18.4 1.0
O B:LEU80 4.5 18.3 1.0
N B:GLY82 4.6 18.3 1.0
N B:ALA83 4.9 20.8 1.0
CA B:GLY82 5.0 19.6 1.0

Reference:

M.Sugahara, M.Taketa, N.Ono, Y.Matsuura, N.Kunishima. Crystal Structure of TTHB049 From Thermus Thermophilus HB8 To Be Published.
Page generated: Tue Dec 15 05:53:04 2020

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