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Sodium in PDB 2ouw: Crystal Structure of Alkylhydroperoxidase Ahpd Core (YP_425393.1) From Rhodospirillum Rubrum Atcc 11170 at 1.95 A Resolution

Protein crystallography data

The structure of Crystal Structure of Alkylhydroperoxidase Ahpd Core (YP_425393.1) From Rhodospirillum Rubrum Atcc 11170 at 1.95 A Resolution, PDB code: 2ouw was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.51 / 1.95
Space group P 63 2 2
Cell size a, b, c (Å), α, β, γ (°) 62.683, 62.683, 216.707, 90.00, 90.00, 120.00
R / Rfree (%) 19.5 / 23.2

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Alkylhydroperoxidase Ahpd Core (YP_425393.1) From Rhodospirillum Rubrum Atcc 11170 at 1.95 A Resolution (pdb code 2ouw). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Alkylhydroperoxidase Ahpd Core (YP_425393.1) From Rhodospirillum Rubrum Atcc 11170 at 1.95 A Resolution, PDB code: 2ouw:

Sodium binding site 1 out of 1 in 2ouw

Go back to Sodium Binding Sites List in 2ouw
Sodium binding site 1 out of 1 in the Crystal Structure of Alkylhydroperoxidase Ahpd Core (YP_425393.1) From Rhodospirillum Rubrum Atcc 11170 at 1.95 A Resolution


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Alkylhydroperoxidase Ahpd Core (YP_425393.1) From Rhodospirillum Rubrum Atcc 11170 at 1.95 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na138

b:39.9
occ:0.50
OD2 A:ASP8 2.1 50.8 1.0
OD1 A:ASP8 2.7 49.6 1.0
CG A:ASP8 2.7 43.5 1.0
OE2 A:GLU11 2.9 37.7 0.5
CG A:GLU11 3.1 44.7 0.5
CD A:GLU11 3.4 44.3 0.5
CB A:ALA10 4.1 43.5 1.0
N A:GLU11 4.2 43.6 1.0
CB A:ASP8 4.2 40.6 1.0
CB A:GLU11 4.3 45.1 0.5
CB A:GLU11 4.4 44.6 0.5
OE1 A:GLU11 4.6 47.3 0.5
OE1 A:GLU11 4.7 50.8 0.5
CA A:GLU11 4.7 44.4 0.5
CA A:GLU11 4.8 44.6 0.5
C A:ALA10 4.9 41.2 1.0
CA A:ALA10 4.9 41.4 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Tue Dec 15 05:52:57 2020

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