Sodium in PDB 2opg: The Crystal Structure of the 10TH Pdz Domain of Mpdz

The structure of The Crystal Structure of the 10TH Pdz Domain of Mpdz, PDB code: 2opg was solved by C.Gileadi, C.Phillips, J.Elkins, E.Papagrigoriou, E.Ugochukwu, F.Gorrec, P.Savitsky, C.Umeano, G.Berridge, O.Gileadi, E.Salah, A.Edwards, C.H.Arrowsmith, J.Weigelt, M.Sundstrom, D.A.Doyle, Structural Genomicsconsortium (Sgc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	39.47 / 1.50
Space group	P 31 2 1
Cell size a, b, c (Å), α, β, γ (°)	54.944, 54.944, 118.355, 90.00, 90.00, 120.00
R / Rfree (%)	17.2 / 21.7

The binding sites of Sodium atom in the The Crystal Structure of the 10TH Pdz Domain of Mpdz (pdb code 2opg). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the The Crystal Structure of the 10TH Pdz Domain of Mpdz, PDB code: 2opg:

Sodium binding site 1 out of 1 in the The Crystal Structure of the 10TH Pdz Domain of Mpdz


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of The Crystal Structure of the 10TH Pdz Domain of Mpdz within 5.0Å range: probe atom residue distance (Å) B Occ A:Na1 b:23.4 occ:1.00 O A:ILE1677 2.8 18.7 1.0 O A:LEU1685 3.0 20.0 1.0 NE2 A:GLN1676 3.0 20.2 1.0 N A:ILE1654 3.1 17.3 1.0 O A:HOH12 3.5 22.6 1.0 CB A:ILE1654 3.5 17.1 1.0 CG A:GLN1676 3.6 17.5 1.0 C A:LEU1685 3.7 18.6 1.0 CG1 A:ILE1654 3.7 16.9 1.0 CD A:GLN1676 3.8 19.4 1.0 CA A:ILE1654 3.8 16.3 1.0 CA A:ARG1686 3.9 19.1 1.0 C A:ILE1677 3.9 17.7 1.0 O A:ARG1686 3.9 26.7 1.0 CA A:ALA1653 4.0 20.1 1.0 C A:ALA1653 4.0 16.2 1.0 O A:ILE1654 4.0 16.7 1.0 N A:ARG1686 4.1 17.7 1.0 C A:ARG1686 4.2 20.7 1.0 CB A:ALA1653 4.3 24.1 1.0 C A:ILE1654 4.4 16.9 1.0 CB A:LEU1685 4.5 20.1 1.0 N A:ILE1677 4.6 16.0 1.0 N A:LEU1678 4.6 16.2 1.0 CA A:LEU1678 4.7 17.9 1.0 O A:HOH86 4.7 29.4 1.0 CA A:LEU1685 4.8 20.0 1.0 CA A:ILE1677 4.8 15.1 1.0 CG2 A:ILE1654 4.9 17.7 1.0 OE1 A:GLN1676 5.0 21.0 1.0

C.Gileadi, C.Phillips, J.Elkins, E.Papagrigoriou, E.Ugochukwu, F.Gorrec, P.Savitsky, C.Umeano, G.Berridge, O.Gileadi, E.Salah, A.Edwards, C.H.Arrowsmith, J.Weigelt, M.Sundstrom, D.A.Doyle, Structural Genomics Consortium (Sgc). The Crystal Structure of the 10TH Pdz Domain of Mpdz To Be Published.