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Sodium in PDB 2oln: Nikd, An Unusual Amino Acid Oxidase Essential For Nikkomycin Biosynthesis: Closed Form at 1.15 A Resolution

Protein crystallography data

The structure of Nikd, An Unusual Amino Acid Oxidase Essential For Nikkomycin Biosynthesis: Closed Form at 1.15 A Resolution, PDB code: 2oln was solved by C.J.Carrell, R.C.Bruckner, D.Venci, G.Zhao, M.S.Jorns, F.S.Mathews, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 1.15
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 78.240, 95.600, 77.900, 90.00, 118.30, 90.00
R / Rfree (%) 12.3 / 14.9

Sodium Binding Sites:

The binding sites of Sodium atom in the Nikd, An Unusual Amino Acid Oxidase Essential For Nikkomycin Biosynthesis: Closed Form at 1.15 A Resolution (pdb code 2oln). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Nikd, An Unusual Amino Acid Oxidase Essential For Nikkomycin Biosynthesis: Closed Form at 1.15 A Resolution, PDB code: 2oln:

Sodium binding site 1 out of 1 in 2oln

Go back to Sodium Binding Sites List in 2oln
Sodium binding site 1 out of 1 in the Nikd, An Unusual Amino Acid Oxidase Essential For Nikkomycin Biosynthesis: Closed Form at 1.15 A Resolution


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Nikd, An Unusual Amino Acid Oxidase Essential For Nikkomycin Biosynthesis: Closed Form at 1.15 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na9001

b:21.8
occ:1.00
O A:GLY268 2.2 19.9 1.0
O A:HOH9297 2.3 27.0 1.0
O A:HOH9145 2.3 41.6 1.0
O A:HOH9061 2.4 21.4 1.0
O A:HOH9133 2.4 21.6 1.0
O A:ALA266 2.4 17.4 1.0
C A:GLY268 3.4 17.8 1.0
C A:ALA266 3.6 15.0 1.0
N A:GLY268 3.7 18.8 1.0
C A:PRO267 3.8 16.4 1.0
O A:HOH9023 3.9 19.9 1.0
O A:ASN263 4.0 18.0 1.0
O A:PRO267 4.1 18.4 1.0
CA A:PRO267 4.1 16.6 1.0
CA A:GLY268 4.2 20.8 1.0
N A:PRO267 4.3 15.1 1.0
O A:HOH9139 4.4 42.0 1.0
N A:GLU269 4.5 20.1 1.0
CA A:ALA266 4.6 15.2 1.0
N A:ALA266 4.6 15.0 1.0
O A:HOH9059 4.7 27.4 1.0
CA A:GLU269 4.7 20.9 1.0
CE1 A:HIS262 4.8 24.4 1.0

Reference:

C.J.Carrell, R.C.Bruckner, D.Venci, G.Zhao, M.S.Jorns, F.S.Mathews. Nikd, An Unusual Amino Acid Oxidase Essential For Nikkomycin Biosynthesis: Structures of Closed and Open Forms at 1.15 and 1.90 A Resolution Structure V. 15 928 2007.
ISSN: ISSN 0969-2126
PubMed: 17697998
DOI: 10.1016/J.STR.2007.06.010
Page generated: Tue Dec 15 05:52:30 2020

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