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Sodium in PDB 2g82: High Resolution Structures of Thermus Aquaticus Glyceraldehyde-3- Phosphate Dehydrogenase: Role of 220'S Loop Motion in Catalysis

Enzymatic activity of High Resolution Structures of Thermus Aquaticus Glyceraldehyde-3- Phosphate Dehydrogenase: Role of 220'S Loop Motion in Catalysis

All present enzymatic activity of High Resolution Structures of Thermus Aquaticus Glyceraldehyde-3- Phosphate Dehydrogenase: Role of 220'S Loop Motion in Catalysis:
1.2.1.12;

Protein crystallography data

The structure of High Resolution Structures of Thermus Aquaticus Glyceraldehyde-3- Phosphate Dehydrogenase: Role of 220'S Loop Motion in Catalysis, PDB code: 2g82 was solved by J.L.Jenkins, R.Buencamino, J.J.Tanner, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 65.94 / 1.65
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 141.549, 147.403, 147.669, 90.00, 90.00, 90.00
R / Rfree (%) 15.8 / 17.2

Sodium Binding Sites:

The binding sites of Sodium atom in the High Resolution Structures of Thermus Aquaticus Glyceraldehyde-3- Phosphate Dehydrogenase: Role of 220'S Loop Motion in Catalysis (pdb code 2g82). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the High Resolution Structures of Thermus Aquaticus Glyceraldehyde-3- Phosphate Dehydrogenase: Role of 220'S Loop Motion in Catalysis, PDB code: 2g82:

Sodium binding site 1 out of 1 in 2g82

Go back to Sodium Binding Sites List in 2g82
Sodium binding site 1 out of 1 in the High Resolution Structures of Thermus Aquaticus Glyceraldehyde-3- Phosphate Dehydrogenase: Role of 220'S Loop Motion in Catalysis


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of High Resolution Structures of Thermus Aquaticus Glyceraldehyde-3- Phosphate Dehydrogenase: Role of 220'S Loop Motion in Catalysis within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Na1600

b:19.5
occ:1.00
 O2 C:PGE1700 2.2 30.1 1.0
O C:HOH1853 2.3 19.3 1.0
O C:HOH1996 2.3 23.2 1.0
O3 C:PGE1700 2.3 30.2 1.0
O1 C:PGE1700 3.0 26.2 1.0
O4 C:PGE1700 3.0 28.1 1.0
C3 C:PGE1700 3.2 29.1 1.0
C2 C:PGE1700 3.2 29.1 1.0
C4 C:PGE1700 3.2 28.7 1.0
C5 C:PGE1700 3.4 31.9 1.0
C6 C:PGE1700 3.4 30.7 1.0
C1 C:PGE1700 3.4 28.6 1.0
O C:HOH1909 4.4 26.1 1.0
O C:HOH1834 4.6 17.9 1.0
O C:HOH1987 4.7 28.9 1.0
O C:HOH1998 4.7 33.6 1.0

Reference:

J.L.Jenkins, R.Buencamino, J.J.Tanner. High Resolution Structures of Thermus Aquaticus Glyceraldehyde-3-Phosphate Dehydrogenase: Role of 220'S Loop Motion in Catalysis To Be Published.
Page generated: Tue Dec 15 05:49:28 2020

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