Sodium in PDB 2g64: Structure of Caenorhabditis Elegans 6-Pyruvoyl Tetrahydropterin Synthase

All present enzymatic activity of Structure of Caenorhabditis Elegans 6-Pyruvoyl Tetrahydropterin Synthase:
4.2.3.12;

The structure of Structure of Caenorhabditis Elegans 6-Pyruvoyl Tetrahydropterin Synthase, PDB code: 2g64 was solved by B.C.Wengerter, Y.Patskovsky, C.Zhan, U.Ramagopal, S.Milstein, M.Vidal, S.C.Almo, S.K.Burley, New York Sgx Research Center For Structuralgenomics (Nysgxrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 1.80
Space group	H 3 2
Cell size a, b, c (Å), α, β, γ (°)	69.792, 69.792, 160.188, 90.00, 90.00, 120.00
R / Rfree (%)	16.1 / 21.9

The structure of Structure of Caenorhabditis Elegans 6-Pyruvoyl Tetrahydropterin Synthase also contains other interesting chemical elements:

Zinc

(Zn)

1 atom

The binding sites of Sodium atom in the Structure of Caenorhabditis Elegans 6-Pyruvoyl Tetrahydropterin Synthase (pdb code 2g64). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Structure of Caenorhabditis Elegans 6-Pyruvoyl Tetrahydropterin Synthase, PDB code: 2g64:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Structure of Caenorhabditis Elegans 6-Pyruvoyl Tetrahydropterin Synthase


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of Caenorhabditis Elegans 6-Pyruvoyl Tetrahydropterin Synthase within 5.0Å range: probe atom residue distance (Å) B Occ A:Na1001 b:29.4 occ:1.00 O A:HOH3019 2.7 22.1 1.0 O A:HOH3117 2.8 35.1 1.0 O A:ASN47 3.0 17.4 1.0 O A:GLU128 3.0 15.3 1.0 CA A:THR130 3.3 17.9 1.0 C A:THR130 3.4 21.1 1.0 O A:HOH3036 3.5 20.7 1.0 N A:THR130 3.6 14.7 1.0 O A:GLU129 3.7 17.4 1.0 N A:PRO131 3.7 17.9 1.0 C A:GLU129 3.7 17.6 1.0 C A:GLU128 3.8 12.6 1.0 CG2 A:VAL49 3.8 13.2 1.0 O A:THR130 3.8 17.2 1.0 CD A:PRO131 3.9 21.3 1.0 CB A:GLU128 4.0 15.7 1.0 N A:VAL49 4.1 12.2 1.0 C A:ASN47 4.2 14.4 1.0 O A:HOH3051 4.2 24.4 1.0 CG A:PRO131 4.4 20.8 1.0 N A:GLU129 4.5 13.0 1.0 CA A:GLU128 4.5 13.2 1.0 CB A:VAL49 4.5 14.7 1.0 CA A:PRO131 4.6 26.1 1.0 CA A:GLU129 4.6 10.0 1.0 CA A:TYR48 4.7 11.6 1.0 CB A:THR130 4.7 17.1 1.0 C A:TYR48 4.7 16.5 1.0 OE1 A:GLU128 4.8 26.5 1.0 N A:TYR48 4.9 12.2 1.0 CA A:VAL49 5.0 11.4 1.0

Sodium binding site 2 out of 2 in the Structure of Caenorhabditis Elegans 6-Pyruvoyl Tetrahydropterin Synthase


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Structure of Caenorhabditis Elegans 6-Pyruvoyl Tetrahydropterin Synthase within 5.0Å range: probe atom residue distance (Å) B Occ A:Na1002 b:30.4 occ:1.00 O A:CYS38 2.7 17.3 1.0 O A:ASN40 2.8 20.5 1.0 ND1 A:HIS44 2.9 15.8 1.0 CA A:GLY43 3.1 19.0 1.0 N A:ASN40 3.2 20.0 1.0 C A:GLY43 3.4 13.2 1.0 C A:CYS38 3.5 17.6 1.0 CB A:ASN40 3.5 31.9 1.0 CE1 A:HIS44 3.5 22.4 1.0 CG A:ARG20 3.6 14.4 1.0 CA A:ARG20 3.6 12.7 1.0 CB A:ARG20 3.6 14.4 1.0 C A:ASN40 3.6 16.2 1.0 N A:GLY43 3.7 19.7 1.0 CA A:ASN40 3.7 21.9 1.0 N A:HIS44 3.7 15.3 1.0 O A:HIS19 3.7 14.8 1.0 C A:ASN39 3.8 22.8 1.0 O A:GLY43 3.9 15.2 1.0 CG A:HIS44 4.0 16.8 1.0 O A:LYS37 4.1 17.6 1.0 N A:ASN39 4.2 13.9 1.0 CA A:ASN39 4.2 17.0 1.0 CA A:CYS38 4.3 23.0 1.0 CB A:HIS44 4.4 12.4 1.0 O A:ASN39 4.5 19.5 1.0 N A:LEU21 4.5 12.8 1.0 C A:HIS19 4.5 16.9 1.0 N A:ARG20 4.5 13.4 1.0 C A:ARG20 4.6 20.4 1.0 CG A:ASN40 4.6 41.1 1.0 ND2 A:ASN40 4.6 17.8 1.0 CD A:ARG20 4.6 18.6 1.0 CA A:HIS44 4.7 11.6 1.0 NE2 A:HIS44 4.8 22.0 1.0 N A:SER41 4.9 23.0 1.0 C A:ASN42 5.0 17.1 1.0

B.C.Wengerter, Y.Patskovsky, C.Zhan, U.Ramagopal, S.Milstein, M.Vidal, S.C.Almo. Crystal Structure of Caenorhabditis Elegans 6-Pyruvoyl Tetrahydropterin Synthase To Be Published.