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Sodium in PDB 2g2c: Putative Molybdenum Cofactor Biosynthesis Protein From Corynebacterium Diphtheriae.

Protein crystallography data

The structure of Putative Molybdenum Cofactor Biosynthesis Protein From Corynebacterium Diphtheriae., PDB code: 2g2c was solved by J.Osipiuk, H.Li, S.Clancy, A.Joachimiak, Midwest Center Forstructural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 32.52 / 1.50
Space group P 63 2 2
Cell size a, b, c (Å), α, β, γ (°) 67.822, 67.822, 114.276, 90.00, 90.00, 120.00
R / Rfree (%) 17.1 / 20.2

Sodium Binding Sites:

The binding sites of Sodium atom in the Putative Molybdenum Cofactor Biosynthesis Protein From Corynebacterium Diphtheriae. (pdb code 2g2c). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Putative Molybdenum Cofactor Biosynthesis Protein From Corynebacterium Diphtheriae., PDB code: 2g2c:

Sodium binding site 1 out of 1 in 2g2c

Go back to Sodium Binding Sites List in 2g2c
Sodium binding site 1 out of 1 in the Putative Molybdenum Cofactor Biosynthesis Protein From Corynebacterium Diphtheriae.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Putative Molybdenum Cofactor Biosynthesis Protein From Corynebacterium Diphtheriae. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na301

b:16.2
occ:1.00
OG1 A:THR76 2.8 16.2 1.0
O A:HOH342 3.2 22.5 1.0
N A:THR76 3.4 11.2 1.0
N A:SER138 3.4 13.6 1.0
N A:GLY75 3.5 11.2 1.0
CA A:GLY74 3.6 12.1 1.0
OG A:SER138 3.6 15.3 0.5
CA A:PRO137 3.7 13.3 1.0
C A:GLY74 3.8 11.2 1.0
CB A:THR76 3.8 13.2 1.0
C A:PRO137 4.0 13.1 1.0
OG A:SER138 4.0 12.8 0.5
O A:HOH318 4.0 19.2 1.0
CA A:THR76 4.0 12.4 1.0
CG2 A:THR76 4.2 13.6 1.0
CB A:SER138 4.2 13.7 0.5
CB A:SER138 4.2 14.3 0.5
CB A:PRO137 4.3 14.9 1.0
N A:GLY74 4.3 11.2 1.0
CA A:SER138 4.4 14.1 0.5
CA A:SER138 4.4 13.7 0.5
O A:HOH362 4.4 24.8 1.0
C A:GLY75 4.4 11.5 1.0
N A:GLY77 4.4 12.3 1.0
CA A:GLY75 4.5 11.6 1.0
O A:HOH421 4.5 37.8 1.0
C A:THR76 4.5 12.4 1.0
O A:GLY74 4.6 11.5 1.0
O A:HOH482 4.6 36.9 1.0
O A:ALA136 4.7 11.4 1.0
N A:PRO137 4.9 13.1 1.0

Reference:

J.Osipiuk, H.Li, S.Clancy, A.Joachimiak. X-Ray Crystal Structure of Putative Molybdenum Cofactor Biosynthesis Protein From Corynebacterium Diphtheriae. To Be Published.
Page generated: Tue Dec 15 05:49:20 2020

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