Sodium in PDB 2ftx: Crystal Structure of the Yeast Kinetochore SPC24/SPC25 Globular Domain

The structure of Crystal Structure of the Yeast Kinetochore SPC24/SPC25 Globular Domain, PDB code: 2ftx was solved by R.R.Wei, S.C.Harrison, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 1.90
Space group	I 41 2 2
Cell size a, b, c (Å), α, β, γ (°)	84.907, 84.907, 93.195, 90.00, 90.00, 90.00
R / Rfree (%)	20.9 / 22.6

The binding sites of Sodium atom in the Crystal Structure of the Yeast Kinetochore SPC24/SPC25 Globular Domain (pdb code 2ftx). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of the Yeast Kinetochore SPC24/SPC25 Globular Domain, PDB code: 2ftx:

Sodium binding site 1 out of 1 in the Crystal Structure of the Yeast Kinetochore SPC24/SPC25 Globular Domain


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the Yeast Kinetochore SPC24/SPC25 Globular Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:Na115 b:29.1 occ:0.50 C A:LEU150 3.8 24.0 1.0 N A:PRO151 3.9 25.9 1.0 O A:LEU150 4.0 22.5 1.0 O A:VAL149 4.1 21.7 1.0 CG1 A:VAL149 4.2 19.4 1.0 CD B:GLU157 4.2 51.3 1.0 CE B:LYS161 4.2 27.8 1.0 CD A:PRO151 4.3 26.0 1.0 CA A:LEU150 4.3 23.6 1.0 CG B:GLU157 4.3 44.8 1.0 OE2 B:GLU157 4.3 50.8 1.0 C A:VAL149 4.3 20.6 1.0 N A:LEU150 4.4 21.8 1.0 CA A:PRO151 4.4 26.4 1.0 OE1 B:GLU157 4.5 54.4 1.0 CG A:PRO151 4.6 26.9 1.0 CB A:VAL149 5.0 18.6 1.0 NZ B:LYS161 5.0 28.1 1.0

R.R.Wei, S.C.Harrison, J.R.Schnell, J.J.Chou. Atomic Structure of the Kinetochore SPC24P/SPC25P Globular Domain Reveals A Novel Fold To Be Published.