Atomistry » Sodium » PDB 2fmp-2gg2 » 2fs6
Atomistry »
  Sodium »
    PDB 2fmp-2gg2 »
      2fs6 »

Sodium in PDB 2fs6: Crystal Structure of Apo-Cellular Retinoic Acid Binding Protein Type II at 1.35 Angstroms Resolution

Protein crystallography data

The structure of Crystal Structure of Apo-Cellular Retinoic Acid Binding Protein Type II at 1.35 Angstroms Resolution, PDB code: 2fs6 was solved by S.Vaezeslami, J.H.Geiger, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 17.24 / 1.35
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 34.449, 37.056, 56.527, 72.68, 76.37, 87.28
R / Rfree (%) 14.8 / 20.4

Other elements in 2fs6:

The structure of Crystal Structure of Apo-Cellular Retinoic Acid Binding Protein Type II at 1.35 Angstroms Resolution also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Apo-Cellular Retinoic Acid Binding Protein Type II at 1.35 Angstroms Resolution (pdb code 2fs6). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Apo-Cellular Retinoic Acid Binding Protein Type II at 1.35 Angstroms Resolution, PDB code: 2fs6:

Sodium binding site 1 out of 1 in 2fs6

Go back to Sodium Binding Sites List in 2fs6
Sodium binding site 1 out of 1 in the Crystal Structure of Apo-Cellular Retinoic Acid Binding Protein Type II at 1.35 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Apo-Cellular Retinoic Acid Binding Protein Type II at 1.35 Angstroms Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na501

b:43.3
occ:1.00
OD1 A:ASP127 2.3 27.3 1.0
O A:HOH796 3.0 24.3 0.2
O A:HOH797 3.2 31.3 0.5
CG A:ASP127 3.4 26.6 1.0
CG2 A:VAL128 3.6 23.4 1.0
O A:HOH796 3.7 21.5 0.8
CG2 A:VAL21 3.7 21.6 0.5
OD2 A:ASP127 3.9 28.5 1.0
N A:ASP127 4.3 24.6 1.0
N A:VAL128 4.6 21.0 1.0
O A:HOH797 4.6 23.6 0.5
CB A:ASP126 4.6 23.9 1.0
CB A:ASP127 4.6 24.6 1.0
O A:ALA125 4.6 22.8 1.0
CG1 A:VAL21 4.7 21.6 0.5
CA A:ASP127 4.8 23.9 1.0
C A:ASP127 4.8 23.2 1.0
CB A:VAL128 4.8 21.0 1.0
CB A:VAL21 4.8 21.1 0.5
CB A:VAL21 4.9 21.0 0.5

Reference:

S.Vaezeslami, E.Mathes, C.Vasileiou, B.Borhan, J.H.Geiger. The Structure of Apo-Wild-Type Cellular Retinoic Acid Binding Protein II at 1.4 A and Its Relationship to Ligand Binding and Nuclear Translocation. J.Mol.Biol. V. 363 687 2006.
ISSN: ISSN 0022-2836
PubMed: 16979656
DOI: 10.1016/J.JMB.2006.08.059
Page generated: Tue Dec 15 05:49:12 2020

Last articles

Zn in 7L0B
Zn in 7KZZ
Zn in 7KZL
Zn in 7L3O
Zn in 7L52
Zn in 7L6T
Zn in 7KZ7
Zn in 7L6R
Zn in 7KKM
Zn in 7KKQ
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy