Atomistry » Sodium » PDB 2bii-2c8x » 2c88
Atomistry »
  Sodium »
    PDB 2bii-2c8x »
      2c88 »

Sodium in PDB 2c88: Crystal Structure of (Sr) Calcium-Atpase E2(Tg):Amppcp Form

Enzymatic activity of Crystal Structure of (Sr) Calcium-Atpase E2(Tg):Amppcp Form

All present enzymatic activity of Crystal Structure of (Sr) Calcium-Atpase E2(Tg):Amppcp Form:
3.6.3.8;

Protein crystallography data

The structure of Crystal Structure of (Sr) Calcium-Atpase E2(Tg):Amppcp Form, PDB code: 2c88 was solved by A.M.Jensen, T.L.Sorensen, C.Olesen, J.V.Moller, P.Nissen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 14.99 / 3.10
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 71.529, 71.529, 590.216, 90.00, 90.00, 90.00
R / Rfree (%) 26.1 / 31

Other elements in 2c88:

The structure of Crystal Structure of (Sr) Calcium-Atpase E2(Tg):Amppcp Form also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of (Sr) Calcium-Atpase E2(Tg):Amppcp Form (pdb code 2c88). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of (Sr) Calcium-Atpase E2(Tg):Amppcp Form, PDB code: 2c88:

Sodium binding site 1 out of 1 in 2c88

Go back to Sodium Binding Sites List in 2c88
Sodium binding site 1 out of 1 in the Crystal Structure of (Sr) Calcium-Atpase E2(Tg):Amppcp Form


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of (Sr) Calcium-Atpase E2(Tg):Amppcp Form within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na1998

b:59.7
occ:1.00
O A:LYS712 2.5 42.1 1.0
OE1 A:GLU732 2.6 44.6 1.0
OE2 A:GLU732 2.6 43.5 1.0
O A:ALA714 2.7 38.4 1.0
CD A:GLU732 2.9 42.6 1.0
O A:LEU711 2.9 38.1 1.0
C A:LYS712 3.2 41.3 1.0
CA A:LYS712 3.5 41.4 1.0
C A:ALA714 3.9 39.0 1.0
C A:LEU711 3.9 36.7 1.0
N A:GLY717 4.1 40.4 1.0
N A:ALA714 4.2 41.8 1.0
N A:LYS713 4.2 41.0 1.0
N A:LYS712 4.2 38.3 1.0
CG A:GLU732 4.3 41.4 1.0
O A:GLU715 4.4 39.0 1.0
C A:LYS713 4.4 42.6 1.0
C A:GLU715 4.5 38.5 1.0
CA A:ALA714 4.6 40.5 1.0
O A:ALA730 4.7 37.0 1.0
CA A:LYS713 4.7 42.7 1.0
CA A:GLY717 4.8 40.2 1.0
CB A:LYS712 4.8 44.3 1.0
N A:ILE716 4.8 39.2 1.0
N A:GLU715 4.9 37.7 1.0
CG A:LYS712 4.9 49.0 1.0
CA A:GLU715 4.9 38.0 1.0
CA A:ILE716 5.0 39.8 1.0
O A:LYS713 5.0 43.3 1.0

Reference:

A.M.Jensen, T.L.Sorensen, C.Olesen, J.V.Moller, P.Nissen. Modulatory and Catalytic Modes of Atp Binding By the Calcium Pump Embo J. V. 25 2305 2006.
ISSN: ISSN 0261-4189
PubMed: 16710301
DOI: 10.1038/SJ.EMBOJ.7601135
Page generated: Tue Dec 15 05:46:31 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy