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Sodium in PDB 2c0g: Structure of Pdi-Related Chaperone, Wind Mutant-Y53S

Protein crystallography data

The structure of Structure of Pdi-Related Chaperone, Wind Mutant-Y53S, PDB code: 2c0g was solved by M.Sevvana, Q.Ma, K.Barnewitz, C.Guo, H.-D.Soling, D.M.Ferrari, G.M.Sheldrick, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.00 / 1.75
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 108.476, 50.557, 98.900, 90.00, 112.06, 90.00
R / Rfree (%) 21.9 / 26.8

Other elements in 2c0g:

The structure of Structure of Pdi-Related Chaperone, Wind Mutant-Y53S also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the Structure of Pdi-Related Chaperone, Wind Mutant-Y53S (pdb code 2c0g). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of Pdi-Related Chaperone, Wind Mutant-Y53S, PDB code: 2c0g:

Sodium binding site 1 out of 1 in 2c0g

Go back to Sodium Binding Sites List in 2c0g
Sodium binding site 1 out of 1 in the Structure of Pdi-Related Chaperone, Wind Mutant-Y53S


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of Pdi-Related Chaperone, Wind Mutant-Y53S within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na2252

b:33.1
occ:1.00
O A:GLN1188 2.6 20.8 1.0
O A:HOH2079 2.7 36.9 1.0
NE2 A:GLN1179 3.0 30.7 1.0
CG A:GLN1179 3.1 29.2 1.0
C A:GLN1188 3.5 19.4 1.0
CD A:GLN1179 3.5 28.4 1.0
CG A:ARG1192 3.6 21.3 1.0
CA A:GLN1188 3.7 19.2 1.0
CB A:ALA1191 3.8 17.4 1.0
CB A:GLN1188 4.0 19.4 1.0
N A:ARG1192 4.1 18.0 1.0
NH2 A:ARG1192 4.1 36.1 1.0
CB A:GLN1179 4.2 21.2 1.0
CD A:ARG1192 4.5 26.6 1.0
C A:ALA1191 4.5 16.9 1.0
O A:GLN1179 4.5 26.6 1.0
CA A:ALA1191 4.6 16.7 1.0
N A:GLN1189 4.7 19.1 1.0
CB A:ARG1192 4.7 18.9 1.0
CA A:ARG1192 4.7 17.5 1.0
OE1 A:GLN1179 4.7 29.5 1.0
CG A:GLN1188 4.7 19.1 1.0
CA A:GLN1179 4.8 23.7 1.0
C A:GLN1179 4.9 24.4 1.0
CD1 A:LEU1182 4.9 16.8 1.0
CZ A:ARG1192 5.0 37.1 1.0

Reference:

M.Sevvana, M.Biadene, Q.Ma, C.Guo, H.-D.Soling, G.M.Sheldrick, D.M.Ferrari. Structural Elucidation of the Pdi-Related Chaperone Wind with the Help of Mutants. Acta Crystallogr.,Sect.D V. 62 589 2006.
ISSN: ISSN 0907-4449
PubMed: 16699185
DOI: 10.1107/S0907444906010456
Page generated: Tue Dec 15 05:46:23 2020

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