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Sodium in PDB 2bpu: The Kedge Holmium Derivative of Hen Egg-White Lysozyme at High Resolution From Single Wavelength Anomalous Diffraction

Enzymatic activity of The Kedge Holmium Derivative of Hen Egg-White Lysozyme at High Resolution From Single Wavelength Anomalous Diffraction

All present enzymatic activity of The Kedge Holmium Derivative of Hen Egg-White Lysozyme at High Resolution From Single Wavelength Anomalous Diffraction:
3.2.1.17;

Protein crystallography data

The structure of The Kedge Holmium Derivative of Hen Egg-White Lysozyme at High Resolution From Single Wavelength Anomalous Diffraction, PDB code: 2bpu was solved by J.Jakoncic, M.Di Michiel, Z.Zhong, V.Honkimaki, Y.Jouanneau, V.Stojanoff, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 27.83 / 1.35
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.707, 78.707, 37.325, 90.00, 90.00, 90.00
R / Rfree (%) 18.3 / 20.7

Other elements in 2bpu:

The structure of The Kedge Holmium Derivative of Hen Egg-White Lysozyme at High Resolution From Single Wavelength Anomalous Diffraction also contains other interesting chemical elements:

Holmium (Ho) 3 atoms
Chlorine (Cl) 3 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the The Kedge Holmium Derivative of Hen Egg-White Lysozyme at High Resolution From Single Wavelength Anomalous Diffraction (pdb code 2bpu). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the The Kedge Holmium Derivative of Hen Egg-White Lysozyme at High Resolution From Single Wavelength Anomalous Diffraction, PDB code: 2bpu:

Sodium binding site 1 out of 1 in 2bpu

Go back to Sodium Binding Sites List in 2bpu
Sodium binding site 1 out of 1 in the The Kedge Holmium Derivative of Hen Egg-White Lysozyme at High Resolution From Single Wavelength Anomalous Diffraction


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of The Kedge Holmium Derivative of Hen Egg-White Lysozyme at High Resolution From Single Wavelength Anomalous Diffraction within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na1133

b:14.4
occ:1.00
O A:SER60 2.2 13.8 1.0
O A:HOH2059 2.4 14.6 1.0
OG A:SER72 2.5 20.2 1.0
O A:HOH2057 2.5 14.2 1.0
O A:CYS64 2.5 10.3 1.0
O A:ARG73 2.5 15.7 1.0
CB A:SER72 3.3 22.5 1.0
C A:SER60 3.4 13.2 1.0
C A:ARG73 3.5 17.9 1.0
C A:CYS64 3.6 11.1 1.0
N A:ARG73 4.0 21.2 1.0
CA A:ASN65 4.0 12.2 1.0
CA A:SER60 4.0 11.9 1.0
N A:ASN65 4.2 11.1 1.0
CB A:SER60 4.2 11.6 1.0
C A:SER72 4.2 22.6 1.0
CA A:ARG73 4.4 19.7 1.0
N A:ASN74 4.4 15.6 1.0
CA A:SER72 4.4 22.9 1.0
N A:ARG61 4.5 14.7 1.0
N A:CYS64 4.5 10.6 1.0
C A:ARG61 4.6 15.5 1.0
CB A:THR69 4.6 17.1 1.0
CA A:ASN74 4.6 14.6 1.0
N A:ASP66 4.6 11.3 1.0
O A:ARG61 4.6 14.4 1.0
CA A:CYS64 4.7 11.2 1.0
OD1 A:ASN65 4.7 15.3 1.0
CL A:CL1132 4.7 19.8 1.0
CA A:ARG61 4.8 15.9 1.0
CB A:ASN74 4.8 14.3 1.0
N A:TRP62 4.9 14.2 1.0
O A:SER72 4.9 23.4 1.0
C A:ASN65 4.9 11.2 1.0
CB A:ASN65 4.9 13.2 1.0
O A:THR69 5.0 17.4 1.0

Reference:

J.Jakoncic, M.Di Michiel, Z.Zhong, V.Honkimaki, Y.Jouanneau, V.Stojanoff. Anomalous Diffraction at Ultra-High Energy For Protein Crystallography. J.Appl.Crystallogr. V. 39 831 2006.
ISSN: ISSN 0021-8898
DOI: 10.1107/S0021889806036387
Page generated: Tue Dec 15 05:46:07 2020

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