Sodium in PDB 2bl2: The Membrane Rotor of the V-Type Atpase From Enterococcus Hirae
Enzymatic activity of The Membrane Rotor of the V-Type Atpase From Enterococcus Hirae
All present enzymatic activity of The Membrane Rotor of the V-Type Atpase From Enterococcus Hirae:
3.6.3.14;
Protein crystallography data
The structure of The Membrane Rotor of the V-Type Atpase From Enterococcus Hirae, PDB code: 2bl2
was solved by
T.Murata,
I.Yamato,
Y.Kakinuma,
A.G.W.Leslie,
J.E.Walker,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
61.00 /
2.1
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
120.136,
125.604,
210.866,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
19 /
20
|
Sodium Binding Sites:
The binding sites of Sodium atom in the The Membrane Rotor of the V-Type Atpase From Enterococcus Hirae
(pdb code 2bl2). This binding sites where shown within
5.0 Angstroms radius around Sodium atom.
In total 10 binding sites of Sodium where determined in the
The Membrane Rotor of the V-Type Atpase From Enterococcus Hirae, PDB code: 2bl2:
Jump to Sodium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Sodium binding site 1 out
of 10 in 2bl2
Go back to
Sodium Binding Sites List in 2bl2
Sodium binding site 1 out
of 10 in the The Membrane Rotor of the V-Type Atpase From Enterococcus Hirae
Mono view
Stereo pair view
|
A full contact list of Sodium with other atoms in the Na binding
site number 1 of The Membrane Rotor of the V-Type Atpase From Enterococcus Hirae within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Na1157
b:23.7
occ:1.00
|
OG1
|
A:THR64
|
2.2
|
23.9
|
1.0
|
OE1
|
A:GLU139
|
2.2
|
25.8
|
1.0
|
O
|
A:LEU61
|
2.2
|
24.0
|
1.0
|
OE1
|
A:GLN110
|
2.2
|
23.2
|
1.0
|
OE1
|
A:GLN65
|
2.3
|
23.9
|
1.0
|
CD
|
A:GLN65
|
3.1
|
23.5
|
1.0
|
CD
|
A:GLN110
|
3.2
|
22.8
|
1.0
|
CD
|
A:GLU139
|
3.2
|
27.9
|
1.0
|
NE2
|
A:GLN65
|
3.3
|
22.9
|
1.0
|
C
|
A:LEU61
|
3.4
|
24.1
|
1.0
|
OE2
|
A:GLU139
|
3.5
|
28.3
|
1.0
|
NE2
|
A:GLN110
|
3.5
|
21.4
|
1.0
|
CB
|
A:THR64
|
3.6
|
23.6
|
1.0
|
CA
|
A:PRO62
|
3.6
|
23.6
|
1.0
|
N
|
A:THR64
|
3.7
|
23.4
|
1.0
|
C
|
A:PRO62
|
3.9
|
23.2
|
1.0
|
N
|
A:PRO62
|
3.9
|
23.5
|
1.0
|
CG2
|
A:THR64
|
4.1
|
22.6
|
1.0
|
N
|
A:GLN65
|
4.1
|
23.0
|
1.0
|
CA
|
A:THR64
|
4.1
|
23.8
|
1.0
|
N
|
A:GLY63
|
4.2
|
22.4
|
1.0
|
O
|
A:PRO62
|
4.3
|
23.8
|
1.0
|
CG
|
A:GLN65
|
4.4
|
23.0
|
1.0
|
C
|
A:THR64
|
4.6
|
23.6
|
1.0
|
CG
|
A:GLN110
|
4.6
|
21.7
|
1.0
|
CA
|
A:LEU61
|
4.6
|
25.7
|
1.0
|
CG
|
A:GLU139
|
4.6
|
26.5
|
1.0
|
C
|
A:GLY63
|
4.8
|
23.6
|
1.0
|
CB
|
A:GLU139
|
5.0
|
25.9
|
1.0
|
|
Sodium binding site 2 out
of 10 in 2bl2
Go back to
Sodium Binding Sites List in 2bl2
Sodium binding site 2 out
of 10 in the The Membrane Rotor of the V-Type Atpase From Enterococcus Hirae
Mono view
Stereo pair view
|
A full contact list of Sodium with other atoms in the Na binding
site number 2 of The Membrane Rotor of the V-Type Atpase From Enterococcus Hirae within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Na1157
b:23.2
occ:1.00
|
OE1
|
B:GLN110
|
2.2
|
24.2
|
1.0
|
OG1
|
B:THR64
|
2.2
|
21.7
|
1.0
|
OE1
|
B:GLU139
|
2.2
|
24.5
|
1.0
|
O
|
B:LEU61
|
2.3
|
24.1
|
1.0
|
OE1
|
B:GLN65
|
2.3
|
23.9
|
1.0
|
CD
|
B:GLN65
|
3.1
|
22.9
|
1.0
|
CD
|
B:GLN110
|
3.2
|
24.3
|
1.0
|
CD
|
B:GLU139
|
3.2
|
26.7
|
1.0
|
NE2
|
B:GLN65
|
3.3
|
23.1
|
1.0
|
C
|
B:LEU61
|
3.4
|
24.6
|
1.0
|
OE2
|
B:GLU139
|
3.5
|
28.5
|
1.0
|
NE2
|
B:GLN110
|
3.5
|
22.6
|
1.0
|
CB
|
B:THR64
|
3.6
|
22.1
|
1.0
|
CA
|
B:PRO62
|
3.6
|
22.6
|
1.0
|
N
|
B:THR64
|
3.7
|
21.9
|
1.0
|
C
|
B:PRO62
|
3.8
|
22.5
|
1.0
|
N
|
B:PRO62
|
3.9
|
22.5
|
1.0
|
CG2
|
B:THR64
|
4.0
|
20.3
|
1.0
|
N
|
B:GLN65
|
4.1
|
21.5
|
1.0
|
CA
|
B:THR64
|
4.1
|
22.3
|
1.0
|
N
|
B:GLY63
|
4.2
|
22.4
|
1.0
|
O
|
B:PRO62
|
4.3
|
22.9
|
1.0
|
CG
|
B:GLN65
|
4.4
|
22.1
|
1.0
|
CG
|
B:GLN110
|
4.5
|
21.0
|
1.0
|
C
|
B:THR64
|
4.5
|
22.7
|
1.0
|
CA
|
B:LEU61
|
4.6
|
25.7
|
1.0
|
CG
|
B:GLU139
|
4.6
|
27.1
|
1.0
|
C
|
B:GLY63
|
4.8
|
22.4
|
1.0
|
CB
|
B:GLU139
|
5.0
|
26.2
|
1.0
|
|
Sodium binding site 3 out
of 10 in 2bl2
Go back to
Sodium Binding Sites List in 2bl2
Sodium binding site 3 out
of 10 in the The Membrane Rotor of the V-Type Atpase From Enterococcus Hirae
Mono view
Stereo pair view
|
A full contact list of Sodium with other atoms in the Na binding
site number 3 of The Membrane Rotor of the V-Type Atpase From Enterococcus Hirae within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Na1157
b:22.4
occ:1.00
|
OG1
|
C:THR64
|
2.2
|
22.9
|
1.0
|
O
|
C:LEU61
|
2.2
|
23.7
|
1.0
|
OE1
|
C:GLN110
|
2.2
|
23.8
|
1.0
|
OE1
|
C:GLU139
|
2.2
|
24.5
|
1.0
|
OE1
|
C:GLN65
|
2.3
|
22.7
|
1.0
|
CD
|
C:GLN65
|
3.1
|
22.1
|
1.0
|
CD
|
C:GLN110
|
3.2
|
24.1
|
1.0
|
CD
|
C:GLU139
|
3.2
|
27.5
|
1.0
|
NE2
|
C:GLN65
|
3.4
|
21.9
|
1.0
|
C
|
C:LEU61
|
3.4
|
24.4
|
1.0
|
OE2
|
C:GLU139
|
3.5
|
28.0
|
1.0
|
CB
|
C:THR64
|
3.6
|
23.1
|
1.0
|
NE2
|
C:GLN110
|
3.6
|
22.9
|
1.0
|
CA
|
C:PRO62
|
3.7
|
24.4
|
1.0
|
N
|
C:THR64
|
3.7
|
22.9
|
1.0
|
C
|
C:PRO62
|
3.8
|
24.2
|
1.0
|
N
|
C:PRO62
|
4.0
|
23.9
|
1.0
|
CG2
|
C:THR64
|
4.0
|
21.5
|
1.0
|
N
|
C:GLN65
|
4.1
|
21.5
|
1.0
|
CA
|
C:THR64
|
4.1
|
22.9
|
1.0
|
N
|
C:GLY63
|
4.2
|
24.4
|
1.0
|
O
|
C:PRO62
|
4.2
|
25.1
|
1.0
|
CG
|
C:GLN65
|
4.5
|
21.4
|
1.0
|
C
|
C:THR64
|
4.5
|
23.1
|
1.0
|
CG
|
C:GLN110
|
4.6
|
22.1
|
1.0
|
CA
|
C:LEU61
|
4.6
|
25.8
|
1.0
|
CG
|
C:GLU139
|
4.6
|
25.8
|
1.0
|
C
|
C:GLY63
|
4.8
|
23.5
|
1.0
|
CB
|
C:GLU139
|
5.0
|
25.3
|
1.0
|
|
Sodium binding site 4 out
of 10 in 2bl2
Go back to
Sodium Binding Sites List in 2bl2
Sodium binding site 4 out
of 10 in the The Membrane Rotor of the V-Type Atpase From Enterococcus Hirae
Mono view
Stereo pair view
|
A full contact list of Sodium with other atoms in the Na binding
site number 4 of The Membrane Rotor of the V-Type Atpase From Enterococcus Hirae within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Na1157
b:24.1
occ:1.00
|
OG1
|
D:THR64
|
2.2
|
22.7
|
1.0
|
OE1
|
D:GLN110
|
2.2
|
23.3
|
1.0
|
OE1
|
D:GLU139
|
2.2
|
25.4
|
1.0
|
O
|
D:LEU61
|
2.2
|
25.7
|
1.0
|
OE1
|
D:GLN65
|
2.3
|
22.8
|
1.0
|
CD
|
D:GLN65
|
3.1
|
23.0
|
1.0
|
CD
|
D:GLN110
|
3.2
|
23.3
|
1.0
|
CD
|
D:GLU139
|
3.2
|
27.4
|
1.0
|
NE2
|
D:GLN65
|
3.4
|
22.3
|
1.0
|
C
|
D:LEU61
|
3.4
|
25.1
|
1.0
|
OE2
|
D:GLU139
|
3.5
|
27.8
|
1.0
|
CB
|
D:THR64
|
3.6
|
22.8
|
1.0
|
NE2
|
D:GLN110
|
3.6
|
22.1
|
1.0
|
CA
|
D:PRO62
|
3.6
|
23.7
|
1.0
|
N
|
D:THR64
|
3.7
|
22.4
|
1.0
|
C
|
D:PRO62
|
3.8
|
23.5
|
1.0
|
N
|
D:PRO62
|
3.9
|
23.7
|
1.0
|
CG2
|
D:THR64
|
4.0
|
22.3
|
1.0
|
N
|
D:GLN65
|
4.1
|
23.4
|
1.0
|
CA
|
D:THR64
|
4.1
|
22.7
|
1.0
|
N
|
D:GLY63
|
4.2
|
23.5
|
1.0
|
O
|
D:PRO62
|
4.3
|
23.4
|
1.0
|
CG
|
D:GLN65
|
4.4
|
22.4
|
1.0
|
C
|
D:THR64
|
4.5
|
23.1
|
1.0
|
CG
|
D:GLN110
|
4.6
|
21.3
|
1.0
|
CA
|
D:LEU61
|
4.6
|
25.1
|
1.0
|
CG
|
D:GLU139
|
4.6
|
26.3
|
1.0
|
C
|
D:GLY63
|
4.8
|
22.3
|
1.0
|
CB
|
D:GLU139
|
5.0
|
25.4
|
1.0
|
|
Sodium binding site 5 out
of 10 in 2bl2
Go back to
Sodium Binding Sites List in 2bl2
Sodium binding site 5 out
of 10 in the The Membrane Rotor of the V-Type Atpase From Enterococcus Hirae
Mono view
Stereo pair view
|
A full contact list of Sodium with other atoms in the Na binding
site number 5 of The Membrane Rotor of the V-Type Atpase From Enterococcus Hirae within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Na1157
b:23.7
occ:1.00
|
OG1
|
E:THR64
|
2.2
|
23.1
|
1.0
|
OE1
|
E:GLU139
|
2.2
|
24.2
|
1.0
|
OE1
|
E:GLN110
|
2.2
|
23.4
|
1.0
|
O
|
E:LEU61
|
2.2
|
25.1
|
1.0
|
OE1
|
E:GLN65
|
2.3
|
22.6
|
1.0
|
CD
|
E:GLN65
|
3.1
|
23.8
|
1.0
|
CD
|
E:GLU139
|
3.2
|
28.6
|
1.0
|
CD
|
E:GLN110
|
3.2
|
24.1
|
1.0
|
NE2
|
E:GLN65
|
3.4
|
23.2
|
1.0
|
C
|
E:LEU61
|
3.4
|
25.6
|
1.0
|
OE2
|
E:GLU139
|
3.5
|
29.1
|
1.0
|
NE2
|
E:GLN110
|
3.5
|
23.1
|
1.0
|
CB
|
E:THR64
|
3.6
|
23.4
|
1.0
|
CA
|
E:PRO62
|
3.7
|
24.8
|
1.0
|
N
|
E:THR64
|
3.7
|
22.7
|
1.0
|
C
|
E:PRO62
|
3.9
|
24.2
|
1.0
|
N
|
E:PRO62
|
4.0
|
24.6
|
1.0
|
CG2
|
E:THR64
|
4.0
|
21.2
|
1.0
|
N
|
E:GLN65
|
4.1
|
23.5
|
1.0
|
CA
|
E:THR64
|
4.1
|
23.4
|
1.0
|
N
|
E:GLY63
|
4.2
|
23.6
|
1.0
|
O
|
E:PRO62
|
4.3
|
24.4
|
1.0
|
CG
|
E:GLN65
|
4.5
|
23.3
|
1.0
|
C
|
E:THR64
|
4.5
|
24.1
|
1.0
|
CG
|
E:GLN110
|
4.6
|
22.1
|
1.0
|
CA
|
E:LEU61
|
4.6
|
26.8
|
1.0
|
CG
|
E:GLU139
|
4.6
|
26.6
|
1.0
|
C
|
E:GLY63
|
4.8
|
23.6
|
1.0
|
CB
|
E:GLU139
|
5.0
|
26.0
|
1.0
|
|
Sodium binding site 6 out
of 10 in 2bl2
Go back to
Sodium Binding Sites List in 2bl2
Sodium binding site 6 out
of 10 in the The Membrane Rotor of the V-Type Atpase From Enterococcus Hirae
Mono view
Stereo pair view
|
A full contact list of Sodium with other atoms in the Na binding
site number 6 of The Membrane Rotor of the V-Type Atpase From Enterococcus Hirae within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Na1157
b:22.4
occ:1.00
|
OG1
|
F:THR64
|
2.2
|
23.7
|
1.0
|
OE1
|
F:GLU139
|
2.2
|
23.9
|
1.0
|
O
|
F:LEU61
|
2.2
|
23.3
|
1.0
|
OE1
|
F:GLN110
|
2.3
|
22.5
|
1.0
|
OE1
|
F:GLN65
|
2.3
|
22.8
|
1.0
|
CD
|
F:GLN65
|
3.1
|
23.1
|
1.0
|
CD
|
F:GLU139
|
3.2
|
26.5
|
1.0
|
CD
|
F:GLN110
|
3.2
|
22.2
|
1.0
|
NE2
|
F:GLN65
|
3.4
|
23.4
|
1.0
|
C
|
F:LEU61
|
3.4
|
23.8
|
1.0
|
OE2
|
F:GLU139
|
3.4
|
27.4
|
1.0
|
NE2
|
F:GLN110
|
3.5
|
21.5
|
1.0
|
CB
|
F:THR64
|
3.6
|
23.9
|
1.0
|
CA
|
F:PRO62
|
3.7
|
22.6
|
1.0
|
N
|
F:THR64
|
3.7
|
23.2
|
1.0
|
C
|
F:PRO62
|
3.9
|
22.1
|
1.0
|
N
|
F:PRO62
|
4.0
|
23.3
|
1.0
|
CG2
|
F:THR64
|
4.1
|
22.6
|
1.0
|
N
|
F:GLN65
|
4.1
|
23.9
|
1.0
|
CA
|
F:THR64
|
4.1
|
24.1
|
1.0
|
N
|
F:GLY63
|
4.2
|
22.4
|
1.0
|
O
|
F:PRO62
|
4.3
|
22.1
|
1.0
|
CG
|
F:GLN65
|
4.4
|
21.6
|
1.0
|
C
|
F:THR64
|
4.5
|
24.2
|
1.0
|
CG
|
F:GLN110
|
4.6
|
20.1
|
1.0
|
CA
|
F:LEU61
|
4.6
|
25.0
|
1.0
|
CG
|
F:GLU139
|
4.6
|
25.6
|
1.0
|
C
|
F:GLY63
|
4.8
|
23.3
|
1.0
|
CB
|
F:GLU139
|
5.0
|
24.5
|
1.0
|
|
Sodium binding site 7 out
of 10 in 2bl2
Go back to
Sodium Binding Sites List in 2bl2
Sodium binding site 7 out
of 10 in the The Membrane Rotor of the V-Type Atpase From Enterococcus Hirae
Mono view
Stereo pair view
|
A full contact list of Sodium with other atoms in the Na binding
site number 7 of The Membrane Rotor of the V-Type Atpase From Enterococcus Hirae within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Na1157
b:23.4
occ:1.00
|
OG1
|
G:THR64
|
2.2
|
22.9
|
1.0
|
O
|
G:LEU61
|
2.2
|
25.3
|
1.0
|
OE1
|
G:GLN110
|
2.2
|
23.3
|
1.0
|
OE1
|
G:GLU139
|
2.2
|
26.6
|
1.0
|
OE1
|
G:GLN65
|
2.3
|
22.5
|
1.0
|
CD
|
G:GLN65
|
3.1
|
22.8
|
1.0
|
CD
|
G:GLN110
|
3.2
|
24.0
|
1.0
|
CD
|
G:GLU139
|
3.2
|
28.2
|
1.0
|
C
|
G:LEU61
|
3.4
|
25.2
|
1.0
|
NE2
|
G:GLN65
|
3.4
|
22.4
|
1.0
|
OE2
|
G:GLU139
|
3.5
|
28.4
|
1.0
|
CB
|
G:THR64
|
3.6
|
24.6
|
1.0
|
NE2
|
G:GLN110
|
3.6
|
22.3
|
1.0
|
CA
|
G:PRO62
|
3.6
|
24.0
|
1.0
|
N
|
G:THR64
|
3.7
|
23.4
|
1.0
|
C
|
G:PRO62
|
3.8
|
23.6
|
1.0
|
N
|
G:PRO62
|
3.9
|
23.8
|
1.0
|
CG2
|
G:THR64
|
4.0
|
22.7
|
1.0
|
N
|
G:GLN65
|
4.1
|
23.7
|
1.0
|
CA
|
G:THR64
|
4.1
|
24.2
|
1.0
|
N
|
G:GLY63
|
4.2
|
23.9
|
1.0
|
O
|
G:PRO62
|
4.3
|
23.3
|
1.0
|
CG
|
G:GLN65
|
4.5
|
22.7
|
1.0
|
C
|
G:THR64
|
4.5
|
24.3
|
1.0
|
CG
|
G:GLN110
|
4.5
|
22.6
|
1.0
|
CA
|
G:LEU61
|
4.6
|
26.2
|
1.0
|
CG
|
G:GLU139
|
4.6
|
25.7
|
1.0
|
C
|
G:GLY63
|
4.8
|
24.4
|
1.0
|
CB
|
G:GLU139
|
5.0
|
25.1
|
1.0
|
|
Sodium binding site 8 out
of 10 in 2bl2
Go back to
Sodium Binding Sites List in 2bl2
Sodium binding site 8 out
of 10 in the The Membrane Rotor of the V-Type Atpase From Enterococcus Hirae
Mono view
Stereo pair view
|
A full contact list of Sodium with other atoms in the Na binding
site number 8 of The Membrane Rotor of the V-Type Atpase From Enterococcus Hirae within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Na1157
b:23.7
occ:1.00
|
OG1
|
H:THR64
|
2.2
|
22.9
|
1.0
|
OE1
|
H:GLN110
|
2.2
|
24.8
|
1.0
|
O
|
H:LEU61
|
2.2
|
24.6
|
1.0
|
OE1
|
H:GLU139
|
2.2
|
28.0
|
1.0
|
OE1
|
H:GLN65
|
2.3
|
22.5
|
1.0
|
CD
|
H:GLN65
|
3.1
|
22.7
|
1.0
|
CD
|
H:GLN110
|
3.2
|
23.9
|
1.0
|
CD
|
H:GLU139
|
3.2
|
28.1
|
1.0
|
NE2
|
H:GLN65
|
3.4
|
23.5
|
1.0
|
C
|
H:LEU61
|
3.4
|
24.4
|
1.0
|
OE2
|
H:GLU139
|
3.5
|
29.3
|
1.0
|
NE2
|
H:GLN110
|
3.6
|
21.7
|
1.0
|
CB
|
H:THR64
|
3.6
|
23.4
|
1.0
|
CA
|
H:PRO62
|
3.6
|
23.9
|
1.0
|
N
|
H:THR64
|
3.7
|
22.9
|
1.0
|
C
|
H:PRO62
|
3.8
|
24.0
|
1.0
|
N
|
H:PRO62
|
3.9
|
24.9
|
1.0
|
CG2
|
H:THR64
|
4.0
|
22.6
|
1.0
|
N
|
H:GLN65
|
4.1
|
23.9
|
1.0
|
CA
|
H:THR64
|
4.1
|
23.3
|
1.0
|
N
|
H:GLY63
|
4.2
|
23.9
|
1.0
|
O
|
H:PRO62
|
4.3
|
25.4
|
1.0
|
CG
|
H:GLN65
|
4.4
|
21.8
|
1.0
|
C
|
H:THR64
|
4.5
|
23.6
|
1.0
|
CG
|
H:GLN110
|
4.5
|
21.1
|
1.0
|
CA
|
H:LEU61
|
4.6
|
26.4
|
1.0
|
CG
|
H:GLU139
|
4.6
|
25.5
|
1.0
|
C
|
H:GLY63
|
4.8
|
23.5
|
1.0
|
CB
|
H:GLU139
|
5.0
|
25.4
|
1.0
|
|
Sodium binding site 9 out
of 10 in 2bl2
Go back to
Sodium Binding Sites List in 2bl2
Sodium binding site 9 out
of 10 in the The Membrane Rotor of the V-Type Atpase From Enterococcus Hirae
Mono view
Stereo pair view
|
A full contact list of Sodium with other atoms in the Na binding
site number 9 of The Membrane Rotor of the V-Type Atpase From Enterococcus Hirae within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Na1157
b:21.5
occ:1.00
|
OE1
|
I:GLU139
|
2.2
|
25.6
|
1.0
|
OE1
|
I:GLN110
|
2.2
|
24.2
|
1.0
|
O
|
I:LEU61
|
2.2
|
23.7
|
1.0
|
OG1
|
I:THR64
|
2.3
|
21.4
|
1.0
|
OE1
|
I:GLN65
|
2.3
|
21.8
|
1.0
|
CD
|
I:GLN65
|
3.1
|
22.0
|
1.0
|
CD
|
I:GLU139
|
3.2
|
27.5
|
1.0
|
CD
|
I:GLN110
|
3.2
|
23.5
|
1.0
|
NE2
|
I:GLN65
|
3.3
|
21.5
|
1.0
|
C
|
I:LEU61
|
3.4
|
23.7
|
1.0
|
OE2
|
I:GLU139
|
3.4
|
28.9
|
1.0
|
NE2
|
I:GLN110
|
3.6
|
21.4
|
1.0
|
CB
|
I:THR64
|
3.6
|
22.3
|
1.0
|
CA
|
I:PRO62
|
3.6
|
22.1
|
1.0
|
N
|
I:THR64
|
3.7
|
21.1
|
1.0
|
C
|
I:PRO62
|
3.9
|
22.3
|
1.0
|
N
|
I:PRO62
|
3.9
|
23.1
|
1.0
|
CG2
|
I:THR64
|
4.1
|
21.6
|
1.0
|
N
|
I:GLN65
|
4.1
|
22.9
|
1.0
|
CA
|
I:THR64
|
4.1
|
22.4
|
1.0
|
N
|
I:GLY63
|
4.2
|
21.5
|
1.0
|
O
|
I:PRO62
|
4.3
|
22.1
|
1.0
|
CG
|
I:GLN65
|
4.5
|
22.0
|
1.0
|
CG
|
I:GLN110
|
4.6
|
22.1
|
1.0
|
CA
|
I:LEU61
|
4.6
|
24.5
|
1.0
|
C
|
I:THR64
|
4.6
|
23.4
|
1.0
|
CG
|
I:GLU139
|
4.6
|
26.5
|
1.0
|
C
|
I:GLY63
|
4.8
|
22.1
|
1.0
|
CB
|
I:GLU139
|
5.0
|
25.8
|
1.0
|
|
Sodium binding site 10 out
of 10 in 2bl2
Go back to
Sodium Binding Sites List in 2bl2
Sodium binding site 10 out
of 10 in the The Membrane Rotor of the V-Type Atpase From Enterococcus Hirae
Mono view
Stereo pair view
|
A full contact list of Sodium with other atoms in the Na binding
site number 10 of The Membrane Rotor of the V-Type Atpase From Enterococcus Hirae within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
J:Na1157
b:22.1
occ:1.00
|
OG1
|
J:THR64
|
2.2
|
21.2
|
1.0
|
OE1
|
J:GLU139
|
2.2
|
25.7
|
1.0
|
OE1
|
J:GLN110
|
2.2
|
20.4
|
1.0
|
O
|
J:LEU61
|
2.2
|
24.1
|
1.0
|
OE1
|
J:GLN65
|
2.3
|
24.0
|
1.0
|
CD
|
J:GLN65
|
3.1
|
24.7
|
1.0
|
CD
|
J:GLN110
|
3.2
|
21.2
|
1.0
|
CD
|
J:GLU139
|
3.2
|
26.4
|
1.0
|
NE2
|
J:GLN65
|
3.3
|
23.5
|
1.0
|
C
|
J:LEU61
|
3.4
|
25.0
|
1.0
|
OE2
|
J:GLU139
|
3.5
|
26.4
|
1.0
|
NE2
|
J:GLN110
|
3.5
|
19.7
|
1.0
|
CB
|
J:THR64
|
3.6
|
23.2
|
1.0
|
CA
|
J:PRO62
|
3.7
|
24.2
|
1.0
|
N
|
J:THR64
|
3.8
|
22.6
|
1.0
|
C
|
J:PRO62
|
3.9
|
23.4
|
1.0
|
N
|
J:PRO62
|
3.9
|
24.9
|
1.0
|
N
|
J:GLN65
|
4.1
|
23.4
|
1.0
|
CG2
|
J:THR64
|
4.1
|
22.0
|
1.0
|
CA
|
J:THR64
|
4.1
|
23.1
|
1.0
|
N
|
J:GLY63
|
4.2
|
23.0
|
1.0
|
O
|
J:PRO62
|
4.3
|
23.4
|
1.0
|
CG
|
J:GLN65
|
4.4
|
23.6
|
1.0
|
CG
|
J:GLN110
|
4.5
|
20.3
|
1.0
|
C
|
J:THR64
|
4.6
|
23.1
|
1.0
|
CA
|
J:LEU61
|
4.6
|
25.9
|
1.0
|
CG
|
J:GLU139
|
4.6
|
26.1
|
1.0
|
C
|
J:GLY63
|
4.8
|
23.5
|
1.0
|
CB
|
J:GLU139
|
5.0
|
25.2
|
1.0
|
|
Reference:
T.Murata,
I.Yamato,
Y.Kakinuma,
A.G.W.Leslie,
J.E.Walker.
Structure of the Rotor of the Vacuolar-Type Na- Atpase From Enterococcus Hirae Science V. 308 654 2005.
ISSN: ISSN 0036-8075
PubMed: 15802565
DOI: 10.1126/SCIENCE.1110064
Page generated: Mon Oct 7 02:00:40 2024
|