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Sodium in PDB 2bjb: Mycobacterium Tuberculosis Epsp Synthase in Unliganded State

Enzymatic activity of Mycobacterium Tuberculosis Epsp Synthase in Unliganded State

All present enzymatic activity of Mycobacterium Tuberculosis Epsp Synthase in Unliganded State:
2.5.1.19;

Protein crystallography data

The structure of Mycobacterium Tuberculosis Epsp Synthase in Unliganded State, PDB code: 2bjb was solved by G.P.Bourenkov, G.S.Kachalova, N.Strizhov, M.Bruning, A.Vagin, H.D.Bartunik, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 15.00 / 1.8
Space group H 3
Cell size a, b, c (Å), α, β, γ (°) 102.864, 102.864, 99.512, 90.00, 90.00, 120.00
R / Rfree (%) 16.2 / 20.5

Sodium Binding Sites:

The binding sites of Sodium atom in the Mycobacterium Tuberculosis Epsp Synthase in Unliganded State (pdb code 2bjb). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Mycobacterium Tuberculosis Epsp Synthase in Unliganded State, PDB code: 2bjb:

Sodium binding site 1 out of 1 in 2bjb

Go back to Sodium Binding Sites List in 2bjb
Sodium binding site 1 out of 1 in the Mycobacterium Tuberculosis Epsp Synthase in Unliganded State


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Mycobacterium Tuberculosis Epsp Synthase in Unliganded State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na1429

b:25.1
occ:1.00
O A:PRO372 2.2 16.2 1.0
O A:GLY356 2.5 20.5 1.0
C A:GLY356 3.3 22.0 1.0
C A:PRO372 3.4 16.6 1.0
CA A:GLY356 3.5 20.9 1.0
OG1 A:THR371 3.9 20.9 0.5
CA A:LEU373 4.0 17.0 1.0
N A:LEU373 4.1 16.3 1.0
O A:LEU355 4.4 18.8 1.0
N A:GLY357 4.5 18.9 1.0
CA A:PRO372 4.5 18.6 1.0
C A:LEU373 4.6 20.2 1.0
OG1 A:THR371 4.6 14.1 0.5
O A:HOH2195 4.7 38.9 1.0
N A:PRO372 4.7 19.7 1.0
CG2 A:THR371 4.7 14.2 0.5
N A:GLY356 4.8 20.9 1.0
CB A:PRO372 4.9 20.5 1.0
N A:ARG374 4.9 19.6 1.0
C A:THR371 5.0 18.1 1.0
CD2 A:LEU373 5.0 18.2 1.0

Reference:

G.P.Bourenkov, G.S.Kachalova, N.Strizhov, M.Bruning, A.Vagin, H.D.Bartunik. Mycobacterium Tuberculosis Epsp Synthase in Unliganded State To Be Published.
Page generated: Tue Dec 15 05:46:02 2020

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