Atomistry » Sodium » PDB 2bii-2c8x » 2biv
Atomistry »
  Sodium »
    PDB 2bii-2c8x »
      2biv »

Sodium in PDB 2biv: Crystal Structure of the Wild-Type Mbt Domains of Human SCML2

Protein crystallography data

The structure of Crystal Structure of the Wild-Type Mbt Domains of Human SCML2, PDB code: 2biv was solved by C.M.Santiveri, M.D.Allen, F.Sait, M.Bycroft, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.70
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 40.020, 88.206, 186.988, 90.00, 90.00, 90.00
R / Rfree (%) 19.8 / 22.9

Other elements in 2biv:

The structure of Crystal Structure of the Wild-Type Mbt Domains of Human SCML2 also contains other interesting chemical elements:

Iodine (I) 10 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of the Wild-Type Mbt Domains of Human SCML2 (pdb code 2biv). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of the Wild-Type Mbt Domains of Human SCML2, PDB code: 2biv:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in 2biv

Go back to Sodium Binding Sites List in 2biv
Sodium binding site 1 out of 2 in the Crystal Structure of the Wild-Type Mbt Domains of Human SCML2


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the Wild-Type Mbt Domains of Human SCML2 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Na1246

b:18.6
occ:1.00
O B:HOH2048 3.0 30.2 1.0
O B:HOH2145 3.1 18.3 1.0
CD B:PRO117 3.8 16.2 1.0
CG B:PRO117 3.9 19.1 1.0
CB B:ALA157 4.2 19.4 1.0
O B:ALA157 4.5 16.4 1.0
CB B:PHE160 4.7 12.1 1.0
CA B:ALA157 4.7 14.6 1.0

Sodium binding site 2 out of 2 in 2biv

Go back to Sodium Binding Sites List in 2biv
Sodium binding site 2 out of 2 in the Crystal Structure of the Wild-Type Mbt Domains of Human SCML2


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of the Wild-Type Mbt Domains of Human SCML2 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Na1247

b:33.2
occ:1.00
O C:HOH2061 2.9 36.0 1.0
NH1 C:ARG94 3.8 17.0 1.0
CE2 C:TYR187 3.8 29.2 1.0
CD2 C:TYR187 3.9 25.4 1.0
CZ C:TYR187 3.9 31.5 1.0
CG C:TYR187 4.0 21.8 1.0
CE1 C:TYR187 4.0 27.6 1.0
CD1 C:TYR187 4.0 25.5 1.0
O C:HOH2041 4.3 46.0 1.0
CZ2 C:TRP107 4.6 19.5 1.0
OH C:TYR187 4.6 36.0 1.0
CB C:TYR187 4.7 19.4 1.0
CZ C:ARG94 4.8 19.5 1.0

Reference:

C.M.Santiveri, B.C.Lechtenberg, M.D.Allen, A.Sathyamurthy, A.M.Jaulent, S.M.V.Freund, M.Bycroft. The Malignant Brain Tumor Repeats of Human SCML2 Bind to Peptides Containing Monomethylated Lysine. J.Mol.Biol. V. 382 1107 2008.
ISSN: ISSN 0022-2836
PubMed: 18706910
DOI: 10.1016/J.JMB.2008.07.081
Page generated: Tue Dec 15 05:46:02 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy