Sodium in PDB 2biv: Crystal Structure of the Wild-Type Mbt Domains of Human SCML2

The structure of Crystal Structure of the Wild-Type Mbt Domains of Human SCML2, PDB code: 2biv was solved by C.M.Santiveri, M.D.Allen, F.Sait, M.Bycroft, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 1.70
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	40.020, 88.206, 186.988, 90.00, 90.00, 90.00
R / Rfree (%)	19.8 / 22.9

The structure of Crystal Structure of the Wild-Type Mbt Domains of Human SCML2 also contains other interesting chemical elements:

Iodine

(I)

10 atoms

The binding sites of Sodium atom in the Crystal Structure of the Wild-Type Mbt Domains of Human SCML2 (pdb code 2biv). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of the Wild-Type Mbt Domains of Human SCML2, PDB code: 2biv:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Crystal Structure of the Wild-Type Mbt Domains of Human SCML2


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the Wild-Type Mbt Domains of Human SCML2 within 5.0Å range: probe atom residue distance (Å) B Occ B:Na1246 b:18.6 occ:1.00 O B:HOH2048 3.0 30.2 1.0 O B:HOH2145 3.1 18.3 1.0 CD B:PRO117 3.8 16.2 1.0 CG B:PRO117 3.9 19.1 1.0 CB B:ALA157 4.2 19.4 1.0 O B:ALA157 4.5 16.4 1.0 CB B:PHE160 4.7 12.1 1.0 CA B:ALA157 4.7 14.6 1.0

Sodium binding site 2 out of 2 in the Crystal Structure of the Wild-Type Mbt Domains of Human SCML2


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of the Wild-Type Mbt Domains of Human SCML2 within 5.0Å range: probe atom residue distance (Å) B Occ C:Na1247 b:33.2 occ:1.00 O C:HOH2061 2.9 36.0 1.0 NH1 C:ARG94 3.8 17.0 1.0 CE2 C:TYR187 3.8 29.2 1.0 CD2 C:TYR187 3.9 25.4 1.0 CZ C:TYR187 3.9 31.5 1.0 CG C:TYR187 4.0 21.8 1.0 CE1 C:TYR187 4.0 27.6 1.0 CD1 C:TYR187 4.0 25.5 1.0 O C:HOH2041 4.3 46.0 1.0 CZ2 C:TRP107 4.6 19.5 1.0 OH C:TYR187 4.6 36.0 1.0 CB C:TYR187 4.7 19.4 1.0 CZ C:ARG94 4.8 19.5 1.0

C.M.Santiveri, B.C.Lechtenberg, M.D.Allen, A.Sathyamurthy, A.M.Jaulent, S.M.V.Freund, M.Bycroft. The Malignant Brain Tumor Repeats of Human SCML2 Bind to Peptides Containing Monomethylated Lysine. J.Mol.Biol. V. 382 1107 2008.
ISSN: ISSN 0022-2836
PubMed: 18706910
DOI: 10.1016/J.JMB.2008.07.081