Sodium in PDB 1z2u: The 1.1A Crystallographic Structure of Ubiquitin-Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans: Functional and Evolutionary Significance

Enzymatic activity of The 1.1A Crystallographic Structure of Ubiquitin-Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans: Functional and Evolutionary Significance

All present enzymatic activity of The 1.1A Crystallographic Structure of Ubiquitin-Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans: Functional and Evolutionary Significance:
6.3.2.19;

Protein crystallography data

The structure of The 1.1A Crystallographic Structure of Ubiquitin-Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans: Functional and Evolutionary Significance, PDB code: 1z2u was solved by J.A.Gavira, E.Digiamamarino, W.Tempel, Z.J.Liu, B.C.Wang, E.Meehan, J.D.Ng, Southeast Collaboratory For Structural Genomics (Secsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	30.00 / 1.10
*Space group*	P 1 2₁ 1
*Cell size a, b, c (Å), α, β, γ (°)*	29.604, 60.457, 43.980, 90.00, 106.45, 90.00
*R / R_free (%)*	13.1 / 14.9

Other elements in 1z2u:

The structure of The 1.1A Crystallographic Structure of Ubiquitin-Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans: Functional and Evolutionary Significance also contains other interesting chemical elements:

Chlorine

(Cl)

6 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the The 1.1A Crystallographic Structure of Ubiquitin-Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans: Functional and Evolutionary Significance (pdb code 1z2u). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the The 1.1A Crystallographic Structure of Ubiquitin-Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans: Functional and Evolutionary Significance, PDB code: 1z2u:

Sodium binding site 1 out of 1 in 1z2u

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Sodium Binding Sites List in 1z2u

Sodium binding site 1 out of 1 in the The 1.1A Crystallographic Structure of Ubiquitin-Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans: Functional and Evolutionary Significance

Mono view

Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of The 1.1A Crystallographic Structure of Ubiquitin-Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans: Functional and Evolutionary Significance within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Na701 b:5.8 occ:1.00	O	A:PRO113	2.3	7.1	1.0
	OD1	A:ASP112	2.3	6.2	1.0
	OH	A:TYR127	2.5	5.9	1.0
	CZ	A:TYR127	3.4	5.2	1.0
	CG	A:ASP112	3.5	6.0	1.0
	C	A:PRO113	3.5	6.3	1.0
	CE2	A:TYR127	3.6	6.1	1.0
	O	A:HOH319	3.7	8.9	1.0
	O	A:HOH353	4.0	13.1	1.0
	C	A:ASP112	4.1	5.8	1.0
	N	A:PRO113	4.1	5.8	1.0
	CD	A:PRO115	4.2	8.3	1.0
	OD2	A:ASP112	4.2	7.3	1.0
	O	A:ASP112	4.3	6.3	1.0
	O	A:HOH309	4.4	8.4	1.0
	CA	A:PRO113	4.4	6.0	1.0
	N	A:ASN114	4.5	7.7	1.0
	CA	A:ASP112	4.5	5.7	1.0
	CA	A:ASN114	4.6	8.4	1.0
	CB	A:ASP112	4.6	6.7	1.0
	CE1	A:TYR127	4.6	5.5	1.0
	CD	A:PRO113	4.7	6.1	1.0
	CD2	A:TYR127	4.9	6.6	1.0

Reference:

J.A.Gavira, E.Digiamamarino, W.Tempel, Z.J.Liu, B.C.Wang, E.Meehan, J.D.Ng. The 1.1A Crystallographic Structure of Ubiquitin-Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans: Functional and Evolutionary Significance To Be Published.

Page generated: Sun Aug 17 09:57:48 2025

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