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Sodium in PDB 2x7k: The Crystal Structure of PPIL1 in Complex with Cyclosporine A Suggests A Binding Mode For Skip

Enzymatic activity of The Crystal Structure of PPIL1 in Complex with Cyclosporine A Suggests A Binding Mode For Skip

All present enzymatic activity of The Crystal Structure of PPIL1 in Complex with Cyclosporine A Suggests A Binding Mode For Skip:
5.2.1.8;

Protein crystallography data

The structure of The Crystal Structure of PPIL1 in Complex with Cyclosporine A Suggests A Binding Mode For Skip, PDB code: 2x7k was solved by C.M.Stegmann, R.Luehrmann, M.C.Wahl, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.28 / 1.15
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 103.218, 35.701, 45.851, 90.00, 90.00, 90.00
R / Rfree (%) 12.8 / 14.9

Other elements in 2x7k:

The structure of The Crystal Structure of PPIL1 in Complex with Cyclosporine A Suggests A Binding Mode For Skip also contains other interesting chemical elements:

Cadmium (Cd) 2 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the The Crystal Structure of PPIL1 in Complex with Cyclosporine A Suggests A Binding Mode For Skip (pdb code 2x7k). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the The Crystal Structure of PPIL1 in Complex with Cyclosporine A Suggests A Binding Mode For Skip, PDB code: 2x7k:

Sodium binding site 1 out of 1 in 2x7k

Go back to Sodium Binding Sites List in 2x7k
Sodium binding site 1 out of 1 in the The Crystal Structure of PPIL1 in Complex with Cyclosporine A Suggests A Binding Mode For Skip


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of The Crystal Structure of PPIL1 in Complex with Cyclosporine A Suggests A Binding Mode For Skip within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na1169

b:17.0
occ:0.98
 OD2 A:ASP7 2.4 23.7 1.0
OD1 A:ASP7 2.9 16.1 1.0
CG A:ASP7 3.0 19.0 1.0
O A:HOH2019 3.4 37.5 1.0
O A:HOH2023 3.4 29.4 1.0
O A:HOH2020 3.8 36.0 1.0
O A:HOH2013 4.0 41.7 1.0
O A:HOH2022 4.3 31.6 1.0
CB A:ASP7 4.4 16.1 1.0
HB3 A:ASP7 4.6 19.3 1.0
HZ2 A:LYS37 4.7 20.5 1.0
HB2 A:ASP7 4.7 19.3 1.0
O A:HOH2170 4.8 27.7 1.0
HE3 A:LYS37 4.9 16.3 1.0

Reference:

C.M.Stegmann, R.Luehrmann, M.C.Wahl. The Crystal Structure of PPIL1 Bound to Cyclosporine A Suggests A Binding Mode For A Linear Epitope of the Skip Protein. Plos One V. 5 13 2010.
ISSN: ESSN 1932-6203
PubMed: 20368803
DOI: 10.1371/JOURNAL.PONE.0010013
Page generated: Mon Oct 7 05:04:54 2024

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