Atomistry » Sodium » PDB 1x9j-1y4d » 1xnz
Atomistry »
  Sodium »
    PDB 1x9j-1y4d »
      1xnz »

Sodium in PDB 1xnz: Crystal Structure of Mn(II) Form of E. Coli. Methionine Aminopeptidase in Complex with 5-(2-Chlorophenyl)Furan-2- Carboxylic Acid

Enzymatic activity of Crystal Structure of Mn(II) Form of E. Coli. Methionine Aminopeptidase in Complex with 5-(2-Chlorophenyl)Furan-2- Carboxylic Acid

All present enzymatic activity of Crystal Structure of Mn(II) Form of E. Coli. Methionine Aminopeptidase in Complex with 5-(2-Chlorophenyl)Furan-2- Carboxylic Acid:
3.4.11.18;

Protein crystallography data

The structure of Crystal Structure of Mn(II) Form of E. Coli. Methionine Aminopeptidase in Complex with 5-(2-Chlorophenyl)Furan-2- Carboxylic Acid, PDB code: 1xnz was solved by Q.-Z.Ye, S.-X.Xie, M.Huang, W.-J.Huang, J.-P.Lu, Z.-Q.Ma, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 10.00 / 1.52
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 37.600, 60.300, 49.700, 90.00, 104.80, 90.00
R / Rfree (%) 21.9 / 25

Other elements in 1xnz:

The structure of Crystal Structure of Mn(II) Form of E. Coli. Methionine Aminopeptidase in Complex with 5-(2-Chlorophenyl)Furan-2- Carboxylic Acid also contains other interesting chemical elements:

Manganese (Mn) 2 atoms
Chlorine (Cl) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Mn(II) Form of E. Coli. Methionine Aminopeptidase in Complex with 5-(2-Chlorophenyl)Furan-2- Carboxylic Acid (pdb code 1xnz). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Mn(II) Form of E. Coli. Methionine Aminopeptidase in Complex with 5-(2-Chlorophenyl)Furan-2- Carboxylic Acid, PDB code: 1xnz:

Sodium binding site 1 out of 1 in 1xnz

Go back to Sodium Binding Sites List in 1xnz
Sodium binding site 1 out of 1 in the Crystal Structure of Mn(II) Form of E. Coli. Methionine Aminopeptidase in Complex with 5-(2-Chlorophenyl)Furan-2- Carboxylic Acid


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Mn(II) Form of E. Coli. Methionine Aminopeptidase in Complex with 5-(2-Chlorophenyl)Furan-2- Carboxylic Acid within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na267

b:12.5
occ:1.00
 O A:ASN74 2.2 11.3 1.0
O A:SER231 2.2 9.8 1.0
O A:VAL76 2.3 11.1 1.0
O A:HOH425 2.3 13.8 1.0
C A:ASN74 3.1 11.9 1.0
C A:SER231 3.3 10.2 1.0
C A:VAL76 3.4 11.7 1.0
N A:ASN74 3.7 10.3 1.0
CA A:ASN74 3.7 11.1 1.0
O A:HOH270 3.7 11.0 1.0
N A:SER231 3.8 9.8 1.0
N A:VAL76 3.8 11.2 1.0
CB A:SER231 3.8 9.9 1.0
CA A:SER231 3.8 9.8 1.0
C A:ILE73 3.9 10.5 1.0
O A:ILE73 4.1 11.1 1.0
N A:GLU75 4.2 13.3 1.0
CA A:VAL76 4.2 11.1 1.0
C A:GLU75 4.2 12.8 1.0
O A:SER72 4.3 11.0 1.0
N A:VAL77 4.3 9.7 1.0
N A:ALA232 4.4 9.6 1.0
O A:HOH269 4.4 10.8 1.0
CA A:VAL77 4.5 9.0 1.0
CA A:GLU75 4.5 12.8 1.0
C A:SER72 4.5 10.9 1.0
OG A:SER231 4.6 10.5 1.0
CD1 A:ILE93 4.6 13.0 1.0
CA A:ILE73 4.6 10.6 1.0
CG1 A:ILE93 4.7 11.2 1.0
N A:ILE73 4.7 9.2 1.0
CA A:ALA232 4.7 10.2 1.0
CB A:SER72 4.7 10.6 1.0
CB A:VAL76 4.7 11.6 1.0
CE A:MET112 4.8 9.8 1.0
O A:GLU75 4.8 11.7 1.0
O A:VAL77 4.9 11.0 1.0
O A:ILE93 4.9 10.6 1.0
C A:VAL77 5.0 10.9 1.0

Reference:

Q.-Z.Ye, S.-X.Xie, M.Huang, W.-J.Huang, J.-P.Lu, Z.-Q.Ma. Metalloform-Selective Inhibitors of Escherichia Coli Methionine Aminopeptidase and X-Ray Structure of A Mn(II)-Form Enzyme Complexed with An Inhibitor. J.Am.Chem.Soc. V. 126 13940 2004.
ISSN: ISSN 0002-7863
PubMed: 15506752
DOI: 10.1021/JA045864P
Page generated: Mon Oct 7 00:33:36 2024

Last articles

Zn in 9J0N
Zn in 9J0O
Zn in 9J0P
Zn in 9FJX
Zn in 9EKB
Zn in 9C0F
Zn in 9CAH
Zn in 9CH0
Zn in 9CH3
Zn in 9CH1
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy