Sodium in PDB 1xdf: Crystal Structure of Pathogenesis-Related Protein Llpr-10.2A From Yellow Lupine

The structure of Crystal Structure of Pathogenesis-Related Protein Llpr-10.2A From Yellow Lupine, PDB code: 1xdf was solved by O.Pasternak, J.Biesiadka, R.Dolot, L.Handschuh, G.Bujacz, M.M.Sikorski, M.Jaskolski, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 1.90
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	48.956, 69.243, 112.918, 90.00, 90.00, 90.00
R / Rfree (%)	20.5 / 25.1

The binding sites of Sodium atom in the Crystal Structure of Pathogenesis-Related Protein Llpr-10.2A From Yellow Lupine (pdb code 1xdf). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Pathogenesis-Related Protein Llpr-10.2A From Yellow Lupine, PDB code: 1xdf:

Sodium binding site 1 out of 1 in the Crystal Structure of Pathogenesis-Related Protein Llpr-10.2A From Yellow Lupine


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Pathogenesis-Related Protein Llpr-10.2A From Yellow Lupine within 5.0Å range: probe atom residue distance (Å) B Occ A:Na401 b:47.6 occ:1.00 O A:ILE37 2.3 21.5 1.0 O A:PRO31 2.3 22.5 1.0 O A:VAL34 2.4 28.0 1.0 O A:HOH473 2.8 51.8 1.0 O A:GLU35 2.9 30.6 1.0 C A:VAL34 3.3 31.5 1.0 C A:GLU35 3.3 29.6 1.0 C A:PRO31 3.4 24.2 1.0 C A:ILE37 3.4 23.7 1.0 CA A:GLU35 3.4 31.7 1.0 N A:GLU35 3.8 31.5 1.0 N A:ILE37 3.9 24.6 1.0 CA A:PRO31 3.9 23.5 1.0 O A:HOH511 4.1 54.2 1.0 CA A:ILE37 4.1 22.7 1.0 N A:ALA36 4.3 26.2 1.0 N A:GLN38 4.4 24.1 1.0 CB A:PRO31 4.5 24.1 1.0 C A:ALA36 4.5 23.5 1.0 CA A:VAL34 4.5 33.1 1.0 O A:HOH536 4.5 63.4 1.0 N A:LYS32 4.6 23.2 1.0 N A:VAL34 4.6 32.2 1.0 CB A:ILE37 4.6 23.6 1.0 OE1 A:GLN38 4.7 41.1 1.0 CA A:GLN38 4.7 27.3 1.0 CB A:GLU35 4.8 33.4 1.0 CA A:LYS32 4.9 24.8 1.0 O A:HOH550 4.9 59.5 1.0 CA A:ALA36 4.9 24.7 1.0

O.Pasternak, J.Biesiadka, R.Dolot, L.Handschuh, G.Bujacz, M.M.Sikorski, M.Jaskolski. Structure of A Yellow Lupin Pathogenesis-Related Pr-10 Protein Belonging to A Novel Subclass. Acta Crystallogr.,Sect.D V. 61 99 2005.
ISSN: ISSN 0907-4449
PubMed: 15608381
DOI: 10.1107/S0907444904028173