Sodium in PDB 1vk1: Conserved Hypothetical Protein From Pyrococcus Furiosus Pfu-392566-001

The structure of Conserved Hypothetical Protein From Pyrococcus Furiosus Pfu-392566-001, PDB code: 1vk1 was solved by A.Shah, Z.J.Liu, W.Tempel, L.Chen, D.Lee, H.Yang, J.Chang, M.Zhao, J.Ng, J.Rose, P.S.Brereton, M.Izumi, F.E.Jenney Jr., F.L.Poole Ii, C.Shah, F.J.Sugar, M.W.W.Adams, D.C.Richardson, J.S.Richardson, B.C.Wang, Southeast Collaboratory For Structural Genomics (Secsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	55.90 / 1.20
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	115.148, 40.099, 65.671, 90.00, 122.29, 90.00
R / Rfree (%)	16.5 / 17.5

The binding sites of Sodium atom in the Conserved Hypothetical Protein From Pyrococcus Furiosus Pfu-392566-001 (pdb code 1vk1). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Conserved Hypothetical Protein From Pyrococcus Furiosus Pfu-392566-001, PDB code: 1vk1:

Sodium binding site 1 out of 1 in the Conserved Hypothetical Protein From Pyrococcus Furiosus Pfu-392566-001


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Conserved Hypothetical Protein From Pyrococcus Furiosus Pfu-392566-001 within 5.0Å range: probe atom residue distance (Å) B Occ A:Na302 b:11.9 occ:1.00 O A:HOH331 2.2 13.7 1.0 O A:THR223 2.3 10.9 1.0 OE2 A:GLU30 2.3 14.2 1.0 OG1 A:THR223 2.4 9.8 1.0 O A:HOH396 2.5 16.6 1.0 CD A:GLU30 3.0 11.7 1.0 OE1 A:GLU30 3.0 12.7 1.0 C A:THR223 3.1 10.8 1.0 CB A:THR223 3.5 9.3 1.0 CA A:THR223 3.6 10.4 1.0 N A:THR223 3.6 10.6 1.0 O A:HOH340 3.7 17.0 1.0 O1 A:PO4301 4.0 14.9 1.0 O3 A:PO4301 4.1 15.3 1.0 O4 A:PO4301 4.2 8.8 1.0 N A:ARG224 4.2 11.0 1.0 NE2 A:HIS29 4.3 9.5 1.0 CG A:GLU30 4.3 10.7 1.0 NE1 A:TRP102 4.3 13.4 1.0 P A:PO4301 4.4 14.4 1.0 O A:VAL68 4.6 9.9 1.0 CA A:ARG224 4.7 12.0 1.0 CG2 A:THR223 4.7 11.6 1.0 CD1 A:TRP102 4.7 12.3 1.0 ND1 A:HIS71 4.7 8.9 1.0 CE1 A:HIS71 4.8 8.8 1.0 CE1 A:HIS29 4.8 8.8 1.0 C A:THR222 4.8 9.6 1.0 N A:THR222 4.8 9.6 1.0 CA A:MLY221 4.9 10.4 1.0 ND1 A:HIS225 4.9 12.2 1.0

N.Shaw, C.Cheng, W.Tempel, J.Chang, J.Ng, X.Y.Wang, S.Perrett, J.Rose, Z.Rao, B.C.Wang, Z.J.Liu. (Nz)Ch...O Contacts Assist Crystallization of A Parb-Like Nuclease. Bmc Struct.Biol. V. 7 46 2007.
ISSN: ESSN 1472-6807
PubMed: 17617922
DOI: 10.1186/1472-6807-7-46