Sodium in PDB 1viz: Crystal Structure of An Hypothetical Protein

The structure of Crystal Structure of An Hypothetical Protein, PDB code: 1viz was solved by Structural Genomix, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.80 / 1.85
Space group	P 32
Cell size a, b, c (Å), α, β, γ (°)	86.460, 86.460, 54.141, 90.00, 90.00, 120.00
R / Rfree (%)	20.2 / 25.8

The binding sites of Sodium atom in the Crystal Structure of An Hypothetical Protein (pdb code 1viz). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of An Hypothetical Protein, PDB code: 1viz:

Sodium binding site 1 out of 1 in the Crystal Structure of An Hypothetical Protein


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of An Hypothetical Protein within 5.0Å range: probe atom residue distance (Å) B Occ B:Na239 b:41.7 occ:1.00 O B:HOH364 2.2 28.4 1.0 O B:PHE58 2.2 32.9 1.0 O B:ARG56 2.3 30.7 1.0 O B:HOH305 2.4 40.8 1.0 C B:ARG56 3.4 31.3 1.0 C B:PHE58 3.4 32.8 1.0 O B:VAL60 3.8 24.3 1.0 OD2 B:ASP77 3.9 21.3 1.0 CA B:ARG56 4.1 31.1 1.0 N B:PHE58 4.1 33.5 1.0 O B:HOH311 4.1 42.2 1.0 C B:LEU59 4.2 29.4 1.0 C B:ARG57 4.3 33.3 1.0 CA B:LEU59 4.3 31.0 1.0 N B:LEU59 4.3 31.8 1.0 O B:LEU59 4.3 30.0 1.0 CA B:PHE58 4.4 32.9 1.0 O B:VAL55 4.4 30.6 1.0 N B:ARG57 4.4 31.0 1.0 OD1 B:ASP77 4.5 22.5 1.0 O B:ARG57 4.5 33.6 1.0 CG B:ASP77 4.7 22.2 1.0 C B:VAL60 4.7 24.1 1.0 CG B:ARG56 4.7 35.1 1.0 N B:VAL60 4.7 26.3 1.0 O B:HOH317 4.7 44.2 1.0 CA B:ARG57 4.8 32.9 1.0 SG B:CYS62 5.0 29.1 1.0 CB B:ARG56 5.0 32.0 1.0

J.Badger, J.M.Sauder, J.M.Adams, S.Antonysamy, K.Bain, M.G.Bergseid, S.G.Buchanan, M.D.Buchanan, Y.Batiyenko, J.A.Christopher, S.Emtage, A.Eroshkina, I.Feil, E.B.Furlong, K.S.Gajiwala, X.Gao, D.He, J.Hendle, A.Huber, K.Hoda, P.Kearins, C.Kissinger, B.Laubert, H.A.Lewis, J.Lin, K.Loomis, D.Lorimer, G.Louie, M.Maletic, C.D.Marsh, I.Miller, J.Molinari, H.J.Muller-Dieckmann, J.M.Newman, B.W.Noland, B.Pagarigan, F.Park, T.S.Peat, K.W.Post, S.Radojicic, A.Ramos, R.Romero, M.E.Rutter, W.E.Sanderson, K.D.Schwinn, J.Tresser, J.Winhoven, T.A.Wright, L.Wu, J.Xu, T.J.Harris. Structural Analysis of A Set of Proteins Resulting From A Bacterial Genomics Project Proteins V. 60 787 2005.
ISSN: ISSN 0887-3585
PubMed: 16021622
DOI: 10.1002/PROT.20541