Atomistry » Sodium » PDB 1qtk-1s3x » 1rm6
Atomistry »
  Sodium »
    PDB 1qtk-1s3x »
      1rm6 »

Sodium in PDB 1rm6: Structure of 4-Hydroxybenzoyl-Coa Reductase From Thauera Aromatica

Enzymatic activity of Structure of 4-Hydroxybenzoyl-Coa Reductase From Thauera Aromatica

All present enzymatic activity of Structure of 4-Hydroxybenzoyl-Coa Reductase From Thauera Aromatica:
1.3.99.20;

Protein crystallography data

The structure of Structure of 4-Hydroxybenzoyl-Coa Reductase From Thauera Aromatica, PDB code: 1rm6 was solved by M.Unciuleac, E.Warkentin, C.C.Page, P.L.Dutton, M.Boll, U.Ermler, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.91 / 1.60
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 113.015, 151.845, 174.866, 90.00, 90.00, 90.00
R / Rfree (%) 15.2 / 17.3

Other elements in 1rm6:

The structure of Structure of 4-Hydroxybenzoyl-Coa Reductase From Thauera Aromatica also contains other interesting chemical elements:

Molybdenum (Mo) 2 atoms
Potassium (K) 1 atom
Iron (Fe) 24 atoms
Chlorine (Cl) 2 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Structure of 4-Hydroxybenzoyl-Coa Reductase From Thauera Aromatica (pdb code 1rm6). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Structure of 4-Hydroxybenzoyl-Coa Reductase From Thauera Aromatica, PDB code: 1rm6:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in 1rm6

Go back to Sodium Binding Sites List in 1rm6
Sodium binding site 1 out of 2 in the Structure of 4-Hydroxybenzoyl-Coa Reductase From Thauera Aromatica


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of 4-Hydroxybenzoyl-Coa Reductase From Thauera Aromatica within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na771

b:18.8
occ:1.00
O A:VAL68 2.7 16.6 1.0
O A:GLU63 2.8 19.9 1.0
O A:LEU65 2.9 19.9 1.0
O A:HOH9204 3.0 40.4 1.0
O A:HOH9085 3.2 33.3 1.0
O A:HOH7608 3.2 46.5 1.0
C A:VAL68 3.8 17.4 1.0
C A:LEU65 3.9 22.9 1.0
C A:GLU63 4.0 21.1 1.0
N A:VAL68 4.0 13.3 1.0
C A:ALA64 4.2 23.9 1.0
CB A:VAL68 4.2 12.7 1.0
CA A:VAL68 4.3 14.3 1.0
O A:ALA64 4.3 25.7 1.0
N A:LEU65 4.4 18.9 1.0
N A:GLY67 4.5 19.6 1.0
CA A:GLU66 4.6 24.8 1.0
CA A:ALA64 4.6 20.6 1.0
N A:GLU66 4.6 20.2 1.0
CA A:LEU65 4.7 19.0 1.0
N A:ALA64 4.7 19.0 1.0
C A:GLU66 4.9 18.2 1.0
N A:ILE69 4.9 11.2 1.0
CG1 A:VAL68 4.9 14.2 1.0
CA A:GLU63 5.0 16.7 1.0
OE2 A:GLU66 5.0 55.5 1.0

Sodium binding site 2 out of 2 in 1rm6

Go back to Sodium Binding Sites List in 1rm6
Sodium binding site 2 out of 2 in the Structure of 4-Hydroxybenzoyl-Coa Reductase From Thauera Aromatica


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Structure of 4-Hydroxybenzoyl-Coa Reductase From Thauera Aromatica within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Na772

b:18.8
occ:1.00
O D:VAL68 2.7 15.0 1.0
O D:GLU63 2.8 24.0 1.0
O D:HOH9384 2.8 40.9 1.0
O D:LEU65 2.9 20.6 1.0
O D:HOH9079 3.1 31.9 1.0
O D:HOH9012 3.8 35.2 1.0
C D:LEU65 3.8 24.9 1.0
C D:VAL68 3.8 15.9 1.0
C D:GLU63 3.9 20.0 1.0
N D:VAL68 4.1 13.4 1.0
C D:ALA64 4.2 24.2 1.0
O D:ALA64 4.3 26.1 1.0
N D:LEU65 4.3 20.5 1.0
CB D:VAL68 4.4 13.5 1.0
CA D:VAL68 4.4 13.4 1.0
CA D:GLU66 4.5 22.0 1.0
CA D:ALA64 4.5 25.1 1.0
N D:GLU66 4.5 21.4 1.0
N D:GLY67 4.5 20.2 1.0
N D:ALA64 4.7 22.6 1.0
CA D:LEU65 4.7 21.2 1.0
C D:GLU66 4.8 19.6 1.0
CA D:GLU63 4.9 19.9 1.0
N D:ILE69 5.0 11.3 1.0

Reference:

M.Unciuleac, E.Warkentin, C.C.Page, M.Boll, U.Ermler. Structure of A Xanthine Oxidase-Related 4-Hydroxybenzoyl-Coa Reductase with An Additional [4FE-4S] Cluster and An Inverted Electron Flow Structure V. 12 2249 2004.
ISSN: ISSN 0969-2126
PubMed: 15576037
DOI: 10.1016/J.STR.2004.10.008
Page generated: Tue Dec 15 05:35:07 2020

Last articles

Zn in 7RRP
Zn in 7OKY
Zn in 7OL0
Zn in 7OKX
Zn in 7ONB
Zn in 7RSF
Zn in 7OUF
Zn in 7OUG
Zn in 7OUH
Zn in 7RGN
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy