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Sodium in PDB 3m5p: Glucose-6-Phosphate Isomerase From Francisella Tularensis Complexed with Fructose-6-Phosphate.

Enzymatic activity of Glucose-6-Phosphate Isomerase From Francisella Tularensis Complexed with Fructose-6-Phosphate.

All present enzymatic activity of Glucose-6-Phosphate Isomerase From Francisella Tularensis Complexed with Fructose-6-Phosphate.:
5.3.1.9;

Protein crystallography data

The structure of Glucose-6-Phosphate Isomerase From Francisella Tularensis Complexed with Fructose-6-Phosphate., PDB code: 3m5p was solved by J.Osipiuk, N.Maltseva, J.Hasseman, W.F.Anderson, A.Joachimiak, Center Forstructural Genomics Of Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 32.10 / 1.65
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 114.272, 114.272, 83.723, 90.00, 90.00, 120.00
R / Rfree (%) 13.1 / 16

Sodium Binding Sites:

The binding sites of Sodium atom in the Glucose-6-Phosphate Isomerase From Francisella Tularensis Complexed with Fructose-6-Phosphate. (pdb code 3m5p). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Glucose-6-Phosphate Isomerase From Francisella Tularensis Complexed with Fructose-6-Phosphate., PDB code: 3m5p:

Sodium binding site 1 out of 1 in 3m5p

Go back to Sodium Binding Sites List in 3m5p
Sodium binding site 1 out of 1 in the Glucose-6-Phosphate Isomerase From Francisella Tularensis Complexed with Fructose-6-Phosphate.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Glucose-6-Phosphate Isomerase From Francisella Tularensis Complexed with Fructose-6-Phosphate. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na704

b:40.1
occ:1.00
 O A:HOH1034 2.0 35.8 1.0
O A:HOH637 2.3 22.9 1.0
O A:HOH671 2.5 16.5 1.0
O A:SER63 2.5 13.4 1.0
O A:GLU61 2.5 16.1 1.0
O A:HOH751 2.7 21.4 1.0
O A:HOH542 3.5 30.2 1.0
C A:GLU61 3.6 16.0 1.0
C A:SER63 3.7 14.8 1.0
O A:HOH787 4.0 15.5 1.0
C A:LYS62 4.1 16.8 1.0
N A:SER63 4.2 16.2 1.0
O A:LYS62 4.3 16.3 1.0
CB A:LYS66 4.3 13.4 1.0
N A:LYS62 4.5 16.9 1.0
O A:ALA60 4.5 16.0 1.0
CA A:LYS62 4.5 17.2 0.4
CA A:LYS62 4.5 17.4 0.6
CA A:SER64 4.5 15.7 1.0
N A:LYS66 4.6 12.3 1.0
CA A:GLU61 4.6 16.0 1.0
N A:SER64 4.6 14.4 1.0
CA A:SER63 4.6 14.8 1.0
C A:SER64 4.7 14.1 1.0
N A:LEU65 4.7 13.0 1.0
CE A:LYS66 4.8 21.9 1.0

Reference:

J.Osipiuk, N.Maltseva, J.Hasseman, W.F.Anderson, A.Joachimiak. X-Ray Crystal Structure of Glucose-6-Phosphate Isomerase From Francisella Tularensis Complexed with Fructose-6-Phosphate. To Be Published.
Page generated: Mon Oct 7 11:26:13 2024

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