Sodium in the structure of 1.6 Angstrom Crystal Structure of the Human Neuroreceptor Anchoring and Molybdenum Cofactor Biosynthesis Protein Gephyrin (pdb 1jlj)

The binding sites of Sodium atom in the structure of 1.6 Angstrom Crystal Structure of the Human Neuroreceptor Anchoring and Molybdenum Cofactor Biosynthesis Protein Gephyrin (pdb code 1jlj). This binding sites where shown with 5.0 Angstroms radius around Sodium atom. The 1jlj structure was solved by G.SCHWARZ, N.SCHRADER, R.R.MENDEL, H.-J.HECHT, H.SCHINDELIN, with X-Ray Crystallography technique, brief refinement statistics is given in the table below: Resolution (A) 20.0-1.6 Space group C121 a (A) 114.269 b (A) 66.008 c (A) 73.122 alpha (°) 90.00 beta (°) 93.27 gamma (°) 90.00 Rfactor (%) 14.7 Rfree (%) 18.3 Sodium Binding Sites: Sodium binding site 1 out of 1 in 1jlj Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Sodium in the PDB 1jlj. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Glu107, B: Glu107, C: Glu107, C: Fmt1001, A: Hoh1033, A: Hoh1064, A: Hoh1109, B: Hoh232, B: Hoh349, C: Hoh1065, C: Hoh1067, C: Hoh1072, C: Hoh1084, C: Hoh1085, C: Hoh1087, C: Hoh1090, C: Hoh1120, conact list: Atom Atom Distance (A) Na OE1 A:Glu107 4.53 Na OE2 A:Glu107 4.52 Na CD A:Glu107 4.94 Na OE1 B:Glu107 4.63 Na OE2 B:Glu107 4.66 Na OE1 C:Glu107 4.23 Na OE2 C:Glu107 4.30 Na CD C:Glu107 4.68 Na O1 C:Fmt1001 3.88 Na C C:Fmt1001 4.62 Na O A:Hoh1033 2.59 Na O A:Hoh1064 3.86 Na O A:Hoh1109 2.44 Na O B:Hoh232 3.47 Na O B:Hoh349 2.51 Na O C:Hoh1065 2.60 Na O C:Hoh1067 4.70 Na O C:Hoh1072 2.26 Na O C:Hoh1084 3.15 Na O C:Hoh1085 2.46 Na O C:Hoh1087 4.86 Na O C:Hoh1090 4.78 Na O C:Hoh1120 3.92 interactive model: