Sodium in PDB 1jlj: 1.6 Angstrom Crystal Structure of the Human Neuroreceptor Anchoring and Molybdenum Cofactor Biosynthesis Protein Gephyrin

The structure of 1.6 Angstrom Crystal Structure of the Human Neuroreceptor Anchoring and Molybdenum Cofactor Biosynthesis Protein Gephyrin, PDB code: 1jlj was solved by G.Schwarz, N.Schrader, R.R.Mendel, H.-J.Hecht, H.Schindelin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 1.60
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	114.269, 66.008, 73.122, 90.00, 93.27, 90.00
R / Rfree (%)	14.7 / 18.3

The binding sites of Sodium atom in the 1.6 Angstrom Crystal Structure of the Human Neuroreceptor Anchoring and Molybdenum Cofactor Biosynthesis Protein Gephyrin (pdb code 1jlj). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the 1.6 Angstrom Crystal Structure of the Human Neuroreceptor Anchoring and Molybdenum Cofactor Biosynthesis Protein Gephyrin, PDB code: 1jlj:

Sodium binding site 1 out of 1 in the 1.6 Angstrom Crystal Structure of the Human Neuroreceptor Anchoring and Molybdenum Cofactor Biosynthesis Protein Gephyrin


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of 1.6 Angstrom Crystal Structure of the Human Neuroreceptor Anchoring and Molybdenum Cofactor Biosynthesis Protein Gephyrin within 5.0Å range: probe atom residue distance (Å) B Occ A:Na1002 b:41.3 occ:1.00 O C:HOH1072 2.3 30.5 1.0 O A:HOH1109 2.4 33.9 1.0 O C:HOH1085 2.5 32.2 1.0 O B:HOH349 2.5 40.6 1.0 O A:HOH1033 2.6 28.4 1.0 O C:HOH1065 2.6 35.5 1.0 O C:HOH1084 3.2 30.4 1.0 O B:HOH232 3.5 33.9 1.0 O A:HOH1064 3.9 31.4 1.0 O1 C:FMT1001 3.9 54.1 1.0 O C:HOH1120 3.9 28.6 1.0 OE1 C:GLU107 4.2 21.0 1.0 OE2 C:GLU107 4.3 29.0 1.0 OE2 A:GLU107 4.5 32.0 1.0 OE1 A:GLU107 4.5 20.8 1.0 C C:FMT1001 4.6 56.9 1.0 OE1 B:GLU107 4.6 20.0 1.0 OE2 B:GLU107 4.7 28.6 1.0 CD C:GLU107 4.7 28.2 1.0 O C:HOH1067 4.7 45.1 1.0 O C:HOH1090 4.8 30.7 1.0 O C:HOH1087 4.9 35.4 1.0 CD A:GLU107 4.9 24.0 1.0

G.Schwarz, N.Schrader, R.R.Mendel, H.J.Hecht, H.Schindelin. Crystal Structures of Human Gephyrin and Plant CNX1 G Domains: Comparative Analysis and Functional Implications. J.Mol.Biol. V. 312 405 2001.
ISSN: ISSN 0022-2836
PubMed: 11554796
DOI: 10.1006/JMBI.2001.4952