Sodium in the structure of Crystal Structure of C-Myb R2 (pdb 1gv5)

The binding sites of Sodium atom in the structure of Crystal Structure of C-Myb R2 (pdb code 1gv5). This binding sites where shown with 5.0 Angstroms radius around Sodium atom. The 1gv5 structure was solved by T.H.TAHIROV, K.OGATA, with X-Ray Crystallography technique, brief refinement statistics is given in the table below: Resolution (A) 14.3-1.6 Space group P212121 a (A) 28.832 b (A) 40.182 c (A) 49.229 alpha (°) 90.00 beta (°) 90.00 gamma (°) 90.00 Rfactor (%) 17.8 Rfree (%) 19 Sodium Binding Sites: Sodium binding site 1 out of 1 in 1gv5 Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Sodium in the PDB 1gv5. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Ala119, A: Lys120, A: Leu122, A: Lys123, A: Gly124, A: Arg125, A: Ile126, A: Hoh2024, A: Hoh2025, A: Hoh2028, A: Hoh2029, conact list: Atom Atom Distance (A) Na O A:Ala119 2.36 Na C A:Ala119 3.40 Na CB A:Ala119 4.27 Na CA A:Ala119 4.27 Na O A:Lys120 4.69 Na N A:Lys120 4.23 Na C A:Lys120 4.49 Na CA A:Lys120 4.26 Na O A:Leu122 2.40 Na N A:Leu122 4.27 Na CB A:Leu122 4.73 Na C A:Leu122 3.46 Na CA A:Leu122 4.33 Na N A:Lys123 4.32 Na C A:Lys123 4.57 Na CA A:Lys123 4.37 Na N A:Gly124 4.33 Na C A:Gly124 4.88 Na O A:Arg125 2.36 Na N A:Arg125 3.78 Na CB A:Arg125 4.56 Na C A:Arg125 3.51 Na CA A:Arg125 4.14 Na N A:Ile126 4.61 Na CA A:Ile126 4.88 Na O A:Hoh2024 2.39 Na O A:Hoh2025 2.48 Na O A:Hoh2028 4.87 Na O A:Hoh2029 2.47 interactive model: