Chemical elements
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    PDB 131d-1bli
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    PDB 3v72-4ag2
    PDB 4aga-4eae
    PDB 4ecn-4g8t
    PDB 4gdt-8icw
    PDB 8icx-9icy

Sodium in the structure of Crystal Structure of C-Myb R1 (pdb 1guu)

The binding sites of Sodium atom in the structure of Crystal Structure of C-Myb R1 (pdb code 1guu). This binding sites where shown with 5.0 Angstroms radius around Sodium atom.
The 1guu structure was solved by T.H.TAHIROV, K.OGATA, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)19.9-1.6
Space groupP1211
a (A)26.273
b (A)35.303
c (A)24.039
alpha (°)90.00
beta (°)93.37
gamma (°)90.00
Rfactor (%)19.2
Rfree (%)22.3

Sodium Binding Sites:

Sodium binding site 1 out of 1 in 1guu

Sodium binding site 1 out of 1 in 1guu
Click to enlarge
stereopicture of Sodium binding site 1 out of 1 in 1guu
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Sodium in the PDB 1guu. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Ala67, A: Asn68, A: Tyr69, A: Leu70, A: Pro71, A: Asn72, A: Arg73, A: Thr74, A: Hoh2023, A: Hoh2024, A: Hoh2027, A: Hoh2028,

conact list:

AtomAtomDistance (A)
NaO A:Ala672.31
NaC A:Ala673.37
NaCB A:Ala674.26
NaCA A:Ala674.19
NaO A:Asn684.66
NaN A:Asn684.28
NaC A:Asn684.47
NaCA A:Asn684.40
NaN A:Tyr694.90
NaO A:Leu702.45
NaN A:Leu704.11
NaCB A:Leu704.67
NaC A:Leu703.31
NaCA A:Leu704.24
NaN A:Pro713.99
NaC A:Pro714.23
NaCA A:Pro714.04
NaN A:Asn724.03
NaC A:Asn724.66
NaCA A:Asn724.83
NaO A:Arg732.54
NaN A:Arg733.63
NaCB A:Arg734.45
NaC A:Arg733.62
NaCA A:Arg734.12
NaN A:Thr744.77
NaO A:Hoh20232.55
NaO A:Hoh20244.19
NaO A:Hoh20272.41
NaO A:Hoh20283.77

interactive model:

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