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Sodium in PDB 1guu: Crystal Structure of C-Myb R1

Protein crystallography data

The structure of Crystal Structure of C-Myb R1, PDB code: 1guu was solved by T.H.Tahirov, K.Ogata, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.85 / 1.6
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 26.273, 35.303, 24.039, 90.00, 93.37, 90.00
R / Rfree (%) 19.2 / 22.3

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of C-Myb R1 (pdb code 1guu). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of C-Myb R1, PDB code: 1guu:

Sodium binding site 1 out of 1 in 1guu

Go back to Sodium Binding Sites List in 1guu
Sodium binding site 1 out of 1 in the Crystal Structure of C-Myb R1


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of C-Myb R1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na1090

b:12.5
occ:1.00
O A:ALA67 2.3 12.4 1.0
O A:HOH2027 2.4 16.8 1.0
O A:LEU70 2.5 11.8 1.0
O A:ARG73 2.5 13.0 1.0
O A:HOH2023 2.5 26.2 1.0
C A:LEU70 3.3 11.7 1.0
C A:ALA67 3.4 11.3 1.0
C A:ARG73 3.6 12.6 1.0
N A:ARG73 3.6 13.9 1.0
O A:HOH2028 3.8 42.4 1.0
N A:PRO71 4.0 11.3 1.0
N A:ASN72 4.0 13.9 1.0
CA A:PRO71 4.0 13.1 1.0
N A:LEU70 4.1 10.6 1.0
CA A:ARG73 4.1 12.8 1.0
O A:HOH2024 4.2 39.1 1.0
CA A:ALA67 4.2 10.1 1.0
C A:PRO71 4.2 13.2 1.0
CA A:LEU70 4.2 11.3 1.0
CB A:ALA67 4.3 10.7 1.0
N A:ASN68 4.3 12.1 1.0
CA A:ASN68 4.4 11.8 1.0
CB A:ARG73 4.4 12.3 1.0
C A:ASN68 4.5 14.0 1.0
C A:ASN72 4.7 16.1 1.0
O A:ASN68 4.7 14.2 1.0
CB A:LEU70 4.7 11.4 1.0
N A:THR74 4.8 12.3 1.0
CA A:ASN72 4.8 16.8 1.0
N A:TYR69 4.9 10.8 1.0

Reference:

T.H.Tahirov, H.Morii, H.Uedaira, M.Sasaki, A.Sarai, S.Adachi, S.Y.Park, N.Kamiya, K.Ogata. Crystal Structure of C-Myb Dna-Binding Domain: Specific Na+ Binding and Correlation with uc(Nmr) Structure To Be Published.
Page generated: Tue Dec 15 05:24:56 2020

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