Sodium in PDB 1goh: Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal Structure of Galactose Oxidase

All present enzymatic activity of Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal Structure of Galactose Oxidase:
1.1.3.9;

The structure of Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal Structure of Galactose Oxidase, PDB code: 1goh was solved by N.Ito, S.E.V.Phillips, P.F.Knowles, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	10.00 / 2.20
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	98.000, 89.400, 86.700, 90.00, 117.80, 90.00
R / Rfree (%)	n/a / n/a

The binding sites of Sodium atom in the Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal Structure of Galactose Oxidase (pdb code 1goh). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal Structure of Galactose Oxidase, PDB code: 1goh:

Sodium binding site 1 out of 1 in the Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal Structure of Galactose Oxidase


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal Structure of Galactose Oxidase within 5.0Å range: probe atom residue distance (Å) B Occ A:Na702 b:20.8 occ:1.00 O A:THR37 2.0 36.6 1.0 O A:LYS29 2.1 29.9 1.0 OD1 A:ASP32 2.1 55.1 1.0 OE2 A:GLU142 2.2 51.4 1.0 O A:ASN34 2.4 46.5 1.0 O A:ALA141 2.5 38.1 1.0 OG1 A:THR37 2.8 49.4 1.0 CG A:ASP32 3.0 58.9 1.0 C A:THR37 3.0 52.2 1.0 C A:LYS29 3.2 36.1 1.0 OD2 A:ASP32 3.3 54.4 1.0 CD A:GLU142 3.3 46.1 1.0 C A:ASN34 3.5 47.5 1.0 C A:ALA141 3.6 30.3 1.0 CA A:THR37 3.8 54.1 1.0 CB A:THR37 3.9 57.8 1.0 N A:ASN34 3.9 39.8 1.0 N A:THR37 4.0 53.1 1.0 N A:PHE38 4.1 46.6 1.0 CA A:ASN34 4.1 41.7 1.0 CA A:LYS29 4.2 35.6 1.0 N A:ALA30 4.2 36.1 1.0 CG A:GLU142 4.2 34.2 1.0 CB A:ASP32 4.3 55.6 1.0 OE1 A:GLU142 4.3 43.5 1.0 N A:ASP32 4.3 62.7 1.0 CB A:ASN34 4.3 69.0 1.0 CA A:ALA30 4.4 38.7 1.0 CA A:ALA141 4.4 21.6 1.0 N A:GLY33 4.4 55.0 1.0 CB A:LYS29 4.5 49.9 1.0 C A:ALA30 4.5 37.8 1.0 CA A:PHE38 4.5 52.1 1.0 N A:LYS35 4.5 38.5 1.0 N A:GLU142 4.6 36.3 1.0 CA A:ASP32 4.7 58.1 1.0 O A:ALA30 4.7 40.6 1.0 CA A:GLU142 4.8 33.7 1.0 CA A:LYS35 4.8 45.6 1.0 C A:ASP32 4.9 50.8 1.0 N A:ILE31 4.9 36.1 1.0

N.Ito, S.E.Phillips, C.Stevens, Z.B.Ogel, M.J.Mcpherson, J.N.Keen, K.D.Yadav, P.F.Knowles. Novel Thioether Bond Revealed By A 1.7 A Crystal Structure of Galactose Oxidase. Nature V. 350 87 1991.
ISSN: ISSN 0028-0836
PubMed: 2002850
DOI: 10.1038/350087A0