Atomistry » Sodium » PDB 1ghy-1hn1 » 1gog
Atomistry »
  Sodium »
    PDB 1ghy-1hn1 »
      1gog »

Sodium in PDB 1gog: Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal Structure of Galactose Oxidase

Enzymatic activity of Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal Structure of Galactose Oxidase

All present enzymatic activity of Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal Structure of Galactose Oxidase:
1.1.3.9;

Protein crystallography data

The structure of Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal Structure of Galactose Oxidase, PDB code: 1gog was solved by N.Ito, S.E.V.Phillips, P.F.Knowles, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 10.00 / 1.90
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 98.000, 89.400, 86.700, 90.00, 117.80, 90.00
R / Rfree (%) n/a / n/a

Other elements in 1gog:

The structure of Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal Structure of Galactose Oxidase also contains other interesting chemical elements:

Copper (Cu) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal Structure of Galactose Oxidase (pdb code 1gog). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal Structure of Galactose Oxidase, PDB code: 1gog:

Sodium binding site 1 out of 1 in 1gog

Go back to Sodium Binding Sites List in 1gog
Sodium binding site 1 out of 1 in the Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal Structure of Galactose Oxidase


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal Structure of Galactose Oxidase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na702

b:15.8
occ:1.00
 O A:THR37 1.9 22.5 1.0
O A:LYS29 1.9 36.6 1.0
OE2 A:GLU142 2.0 47.5 1.0
OD1 A:ASP32 2.0 45.3 1.0
O A:ASN34 2.2 50.0 1.0
O A:ALA141 2.4 35.4 1.0
OG1 A:THR37 2.7 35.3 1.0
C A:THR37 3.0 45.6 1.0
CG A:ASP32 3.1 45.0 1.0
CD A:GLU142 3.1 41.3 1.0
C A:LYS29 3.2 32.8 1.0
C A:ASN34 3.3 44.3 1.0
C A:ALA141 3.5 22.5 1.0
OD2 A:ASP32 3.5 46.0 1.0
CA A:THR37 3.8 39.3 1.0
CB A:THR37 3.9 31.4 1.0
N A:PHE38 4.0 30.8 1.0
CG A:GLU142 4.0 38.1 1.0
N A:ASN34 4.1 31.1 1.0
N A:THR37 4.1 46.3 1.0
CA A:LYS29 4.1 33.3 1.0
OE1 A:GLU142 4.1 30.7 1.0
N A:ALA30 4.1 26.6 1.0
CA A:ASN34 4.2 29.7 1.0
CA A:ALA30 4.2 24.9 1.0
CA A:ALA141 4.3 16.9 1.0
N A:ASP32 4.3 49.1 1.0
CB A:LYS29 4.3 35.2 1.0
CB A:ASP32 4.4 37.0 1.0
N A:LYS35 4.4 41.7 1.0
N A:GLU142 4.4 29.5 1.0
C A:ALA30 4.4 38.5 1.0
CA A:PHE38 4.5 42.2 1.0
N A:GLY33 4.5 46.1 1.0
CB A:ASN34 4.5 53.4 1.0
CA A:GLU142 4.6 24.3 1.0
CA A:LYS35 4.7 45.1 1.0
CA A:ASP32 4.7 43.5 1.0
N A:ILE31 4.8 37.9 1.0
O A:ALA30 4.8 34.4 1.0
CB A:GLU142 4.9 29.5 1.0

Reference:

N.Ito, S.E.Phillips, C.Stevens, Z.B.Ogel, M.J.Mcpherson, J.N.Keen, K.D.Yadav, P.F.Knowles. Novel Thioether Bond Revealed By A 1.7 A Crystal Structure of Galactose Oxidase. Nature V. 350 87 1991.
ISSN: ISSN 0028-0836
PubMed: 2002850
DOI: 10.1038/350087A0
Page generated: Sun Oct 6 18:37:42 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy