Sodium in PDB, part 248 (files: 9881-9920),
PDB 7icq-7k15
Experimental structures of coordination spheres of Sodium (Na) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Sodium atoms. PDB files: 9881-9920 (PDB 7icq-7k15).
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7icq (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex, Soaked in the Presence of ZNCL2
Other atoms:
Zn (1);
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7icr (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex, Soaked in the Presence of ZNCL2
Other atoms:
Zn (2);
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7ics (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex, Soaked in the Presence of ZNCL2
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7ict (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex, Soaked in the Presence of ZNCL2 and MGCL2
Other atoms:
Zn (1);
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7icu (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Six Base Pairs of Dna; Soaked in the Presence of CDCL2 (0.1 Millimolar)
Other atoms:
Cd (1);
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7icv (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Six Base Pairs of Dna; Soaked in the Presence of MNCL2 (0.1 Millimolar) and in the Absence of Nacl
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7jg3 (Na: 1) - Human Gar Transformylase in Complex with Gar Substrate and AGF103 Inhibitor
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7jg4 (Na: 1) - Human Gar Transformylase in Complex with Gar Substrate and AGF131 Inhibitor
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7jgk (Na: 1) - Crystal Structure of the Ni-Bound Human Heavy-Chain Variant 122H-Delta C-Star with 2,5-Furandihyrdoxamate Collected at 100K
Other atoms:
Ni (3);
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7jgo (Na: 1) - Crystal Structure of the Ni-Bound Human Heavy-Chain Variant 122H-Delta C-Star with 2,5-Furandihyrdoxamate Collected at 278K
Other atoms:
Ni (3);
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7jgp (Na: 1) - Crystal Structure of the Ni-Bound Human Heavy-Chain Variant 122H-Delta C-Star with 2,5-Furandihyrdoxamate at 318K
Other atoms:
Ni (3);
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7jgq (Na: 1) - Crystal Structure of the Ni-Bound Human Heavy-Chain Variant 122H-Delta C-Star with 2,5-Furandihyrdoxamate Collected at 278K After One Heating/Cooling Cycle
Other atoms:
Ni (3);
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7jhk (Na: 1) - Structure of Human Beta 1,3-N-Acetylglucosaminyltransferase 2 in Unliganded Form
Other atoms:
Cl (6);
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7jhq (Na: 3) - Oxa-48 Bound By Compound 2.3
Other atoms:
Cl (2);
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7jja (Na: 2) - Crystal Structure of the Zint-Like Domain of Streptococcus Pneumoniae Adca in the Apo Form
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7jjb (Na: 6) - Crystal Structure of Zn(II)-Bound Zint-Like Domain of Streptococcus Pneumoniae Adca
Other atoms:
Mg (1);
Zn (2);
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7jky (Na: 1) - Bromodomain-Containing Protein 4 (BRD4) Bromodomain 1 (BD1) Complexed with YF3-126
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7jlk (Na: 17) - Crystal Structure of GLVRC01 Fab in Complex with Anti-Idiotype IV1 Scfv
Other atoms:
Cl (14);
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7jln (Na: 1) - Crystal Structure of GLVRC01 Fab in Complex with Anti-Idiotype IV9 Fab
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7jmq (Na: 1) - The External Aldimine Form of the Mutant Beta-S377A Salmonella Thypi Tryptophan Synthase in Open Conformation Showing Dual Side Chain Conformations For the Residue Beta-Q114, Sodium Ion at the Metal Coordination Site, and F9 Inhibitor at the Alpha-Site. One of the Beta-Q114 Rotamer Conformations Allows A Hydrogen Bond to Form with the Plp Oxygen at the Position 3 in the Ring
Other atoms:
Cs (2);
Cl (1);
F (3);
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7jr1 (Na: 4) - Crystal Structure of the R64F Mutant of Bauhinia Bauhinioides Kallikrein Inhibitor Complexed with Bovine Trypsin
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7jr6 (Na: 2) - H-Pdgs Complexed with A 2-Phenylimidazo[1,2-A]Pyridine-6-Carboxamide Inhibitors
Other atoms:
Mg (2);
F (2);
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7jr8 (Na: 3) - H-Pdgs Complexed with A 2-Phenylimidazo[1,2-A]Pyridine-6-Carboxamide Inhibitors
Other atoms:
Mg (2);
Cl (1);
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7jsj (Na: 4) - Structure of the Nact-PF2 Complex
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7jsk (Na: 4) - Structure of the Nact-Citrate Complex
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7jtj (Na: 1) - Crystal Structure of the Second Heterocyclization Domain of Yersiniabactin Synthetase
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7jto (Na: 1) - Crystal Structure of Protac MS33 in Complex with the Wd Repeat- Containing Protein 5 and Pvhl:Elonginc:Elonginb
Other atoms:
F (3);
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7jua (Na: 1) - Crystal Structure of the Second Heterocyclization Domain of Yersiniabactin Synthetase at 2.35 A Resolution
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7jw9 (Na: 1) - Ternary Cocrystal Structure of Alkanesulfonate Monooxygenase Msud From Pseudomonas Fluorescens
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7jx6 (Na: 4) - Structure of the Sars-Cov-2 ORF8 Encoded Accessory Protein
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7jxa (Na: 3) - Crystal Structure of Native Bovine Arrestin 1 in Complex with Inositol 1,4,5-Triphosphate
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7jxf (Na: 3) - E. Coli Tsase Complex with A Bi-Substrate Reaction Intermediate Diastereomer Analog
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7jxn (Na: 1) - Beta Hairpin Derived From ABETA17-36 with An F20CHA Mutation
Other atoms:
Cl (2);
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7jxx (Na: 3) - Structure of TTBK1 Kinase Domain in Complex with Compound 3
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7jyc (Na: 1) - Crystal Structure of Sars-Cov-2 Main Protease (3CLPRO/Mpro) in Complex with Covalent Inhibitor Narlaprevir
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7jyw (Na: 2) - Crystal Structure of Hla A*2402 in Complex with Tyqwiirnw, An 9-Mer Influenza Epitope
Other atoms:
Ca (1);
Ni (1);
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7jyy (Na: 3) - Crystal Structure of Sars-Cov-2 NSP16/10 Heterodimer in Complex with (M7GPPPA)Pupupapapa (Cap-0) and S-Adenosylmethionine (Sam).
Other atoms:
Mg (2);
Zn (4);
Cl (1);
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7jz0 (Na: 4) - Crystal Structure of Sars-Cov-2 NSP16/10 Heterodimer in Complex with (M7GPPPA2M)Pupupapapa (Cap-1) and S-Adenosyl-L-Homocysteine (Sah).
Other atoms:
Zn (4);
Cl (7);
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7jz2 (Na: 3) - Succinate: Quinone Oxidoreductase Sqr From E.Coli K12
Other atoms:
Fe (30);
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7k15 (Na: 1) - Crystal Structure of the Human Leukotriene B4 Receptor 1 in Complex with Selective Antagonist Mk-D-046
Other atoms:
F (1);
Page generated: Tue Feb 25 11:40:39 2025
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