Sodium in PDB, part 230 (files: 9161-9200),
PDB 6xzz-6yd7
Experimental structures of coordination spheres of Sodium (Na) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Sodium atoms. PDB files: 9161-9200 (PDB 6xzz-6yd7).
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6xzz (Na: 7) - Crystal Structure of the BCL6 Btb Domain in Complex with the NCOR1 BBD2 Peptide
Other atoms:
F (3);
Cl (2);
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6y02 (Na: 2) - Thrombin in Complex with 13K
Other atoms:
Br (1);
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6y0y (Na: 1) - Sarcin Ricin Loop, Mutant C2666U
Other atoms:
Mg (1);
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6y17 (Na: 1) - Crystal Structure of An NCOR1BBD2-BCL6BTB Chimera in Complex with NEBULINSH3-NCOR1BBD1
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6y45 (Na: 1) - Crystal Structure of the H33A Variant of Rsrr
Other atoms:
Fe (8);
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6y5m (Na: 4) - Crystal Structure of Mouse Autotaxin in Complex with Compound 1A
Other atoms:
F (1);
Zn (2);
Cl (3);
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6y5s (Na: 1) - Crystal Structure of Savinase at Cryogenic Conditions
Other atoms:
Ca (1);
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6y5t (Na: 1) - Crystal Structure of Savinase at Room Temperature
Other atoms:
Ca (1);
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6y6y (Na: 2) - Pseudomonas Stutzeri Nitrous Oxide Reductase Mutant, H129A
Other atoms:
Ca (1);
Zn (1);
Cu (4);
Cl (2);
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6y71 (Na: 2) - Pseudomonas Stutzeri Nitrous Oxide Reductase Mutant, H130A
Other atoms:
Ca (2);
Cl (2);
Cu (4);
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6y72 (Na: 2) - Pseudomonas Stutzeri Nitrous Oxide Reductase Mutant, H178A
Other atoms:
Cl (1);
Cu (4);
K (1);
Ca (2);
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6y76 (Na: 3) - AP01 - A Redesigned Transferrin Receptor Apical Domain
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6y77 (Na: 2) - Pseudomonas Stutzeri Nitrous Oxide Reductase Mutant, H326A
Other atoms:
Cu (4);
Zn (2);
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6y7d (Na: 2) - Pseudomonas Stutzeri Nitrous Oxide Reductase Mutant, H433A
Other atoms:
Ca (1);
Cl (2);
Cu (4);
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6y7e (Na: 2) - Pseudomonas Stutzeri Nitrous Oxide Reductase Mutant, H494A
Other atoms:
Ca (1);
Zn (3);
Cl (2);
Cu (4);
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6y7k (Na: 2) - Structure of the BRD9 Bromodomain and Compound 27
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6y7t (Na: 5) - Engineered Conjugation of Lysine-Specific Molecular Tweezers with Exos Derived Peptidic Inhibitor Enhance Affinity Towards Target Protein 14-3-3 Through Ditopic Binding
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6y8o (Na: 5) - Mycobacterium Smegmatis Gyrb 22KDA Atpase Sub-Domain in Complex with Novobiocin
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6y8y (Na: 5) - Structure of Baltic Herring (Clupea Harengus) Phosphoglucomutase 5 (PGM5) with Bound Glucose-1-Phosphate
Other atoms:
Ni (1);
Ca (1);
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6y8z (Na: 4) - Structure of Baltic Herring (Clupea Harengus) Phosphoglucomutase 5 (PGM5)
Other atoms:
Ni (1);
Ca (1);
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6y9h (Na: 2) - Thrombin in Complex with D-Phe-Pro-M-Trifluoromethylbenzylamide Derivative (PHE2)
Other atoms:
F (6);
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6y9j (Na: 1) - Crystal Structure of Subtype-Switched Epithelial Adhesin 1 to 9 A Domain (EPA1-CBL2EPA9) From Candida Glabrata in Complex with Beta- Lactose
Other atoms:
Ca (1);
Cl (2);
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6yb6 (Na: 2) - Thrombin in Complex with D-Phe-Pro-3-Chloro-1,3-Dihydroxybenzylamide Derivative (13C)
Other atoms:
Cl (1);
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6ybf (Na: 1) - Rt Structure of Hew Lysozyme Obtained at 1.13 A Resolution From Crystal Grown in A Kapton Microchip.
Other atoms:
Cl (1);
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6ybi (Na: 1) - Rt Structure of Hew Lysozyme Obtained at 1.12 A Resolution From Crystal Grown in A Mylar Microchip.
Other atoms:
Cl (2);
-
6ybo (Na: 1) - Rt Structure of Glucose Isomerase Obtained at 1.06 A Resolution From Crystal Grown in A Kapton Microchip.
Other atoms:
Mg (2);
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6ybr (Na: 2) - Rt Structure of Glucose Isomerase Obtained at 1.20 A Resolution From Crystal Grown in A Mylar Microchip.
Other atoms:
Mg (2);
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6ybx (Na: 1) - Rt Structure of Thaumatin Obtained at 1.14 A Resolution From Crystal Grown in A Mylar Microchip.
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6yby (Na: 1) - Crystal Structure of the D116N Mutant of the Light-Driven Sodium Pump KR2 in the Monomeric Form, pH 4.6
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6ybz (Na: 5) - Crystal Structure of the D116N Mutant of the Light-Driven Sodium Pump KR2 in the Pentameric Form, pH 8.0
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6yc0 (Na: 10) - Crystal Structure of the Steady-State-Smx Activated State of the Light-Driven Sodium Pump KR2 in the Pentameric Form at Room Temperature, pH 8.0
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6yc1 (Na: 5) - Crystal Structure of the H30A Mutant of the Light-Driven Sodium Pump KR2 in the Pentameric Form, pH 8.0
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6yc2 (Na: 5) - Crystal Structure of the Light-Driven Sodium Pump KR2 in the Pentameric Form at Room Temperature, pH 8.0
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6yc3 (Na: 10) - Crystal Structure of the Light-Driven Sodium Pump KR2 in the Pentameric Form, pH 8.0
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6yc4 (Na: 10) - Crystal Structure of the Steady-State Activated State of the Light- Driven Sodium Pump KR2 in the Pentameric Form at Room Temperature, pH 8.0
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6yc5 (Na: 1) - Rt Structure of Thaumatin Obtained at 1.35 A Resolution From Crystal Grown in A Kapton Microchip.
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6ycq (Na: 1) - Crystal Structure of the Dna Binding Domain of Arabidopsis Thaliana Auxin Response Factor 1 (ATARF1) in Complex with High Affinity Dna
Other atoms:
Cl (12);
-
6ycs (Na: 1) - Human Transcription Cofactor PC4 Dna-Binding Domain in Complex with Full Phosphorothioate 5-10-5 2'-O-Methyl Dna Gapmer Antisense Oligonucleotide
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6yd4 (Na: 3) - X-Ray Structure of Furin in Complex with the Canavanine-Based Inhibitor 4-Guanidinomethyl-Phenylacetyl-Canavanine-Tle-Canavanine- Amba
Other atoms:
Cl (1);
Ca (3);
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6yd7 (Na: 3) - X-Ray Structure of Furin in Complex with the Canavanine-Based Inhibitor 4-Guanidinomethyl-Phenylacetyl-Arg-Tle-Canavanine-Amba
Other atoms:
Cl (1);
Ca (3);
Page generated: Mon Dec 15 11:15:55 2025
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