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Sodium in PDB 8uze: Crystal Structure of Chimeric Bat Coronavirus Banal-20-236 Rbd Complexed with Chimeric Mouse ACE2

Protein crystallography data

The structure of Crystal Structure of Chimeric Bat Coronavirus Banal-20-236 Rbd Complexed with Chimeric Mouse ACE2, PDB code: 8uze was solved by W.Zhang, K.Shi, H.Aihara, F.Li, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.43 / 3.03
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 80.142, 118.211, 107.86, 90, 96.14, 90
R / Rfree (%) 21.4 / 26.1

Other elements in 8uze:

The structure of Crystal Structure of Chimeric Bat Coronavirus Banal-20-236 Rbd Complexed with Chimeric Mouse ACE2 also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms
Zinc (Zn) 2 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Chimeric Bat Coronavirus Banal-20-236 Rbd Complexed with Chimeric Mouse ACE2 (pdb code 8uze). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Chimeric Bat Coronavirus Banal-20-236 Rbd Complexed with Chimeric Mouse ACE2, PDB code: 8uze:

Sodium binding site 1 out of 1 in 8uze

Go back to Sodium Binding Sites List in 8uze
Sodium binding site 1 out of 1 in the Crystal Structure of Chimeric Bat Coronavirus Banal-20-236 Rbd Complexed with Chimeric Mouse ACE2


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Chimeric Bat Coronavirus Banal-20-236 Rbd Complexed with Chimeric Mouse ACE2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na709

b:66.7
occ:1.00
O A:ALA153 3.0 70.0 1.0
O A:ASN277 3.2 48.0 1.0
C A:ALA153 3.8 69.6 1.0
CA A:ASN154 3.9 71.2 1.0
O A:ASN154 3.9 73.1 1.0
OG A:SER280 3.9 53.9 1.0
C A:ASN154 4.1 72.3 1.0
N A:ASN154 4.2 70.3 1.0
C A:ASN277 4.2 50.5 1.0
CD2 A:LEU156 4.3 70.2 1.0
CB A:ASN277 4.6 48.0 1.0
O A:SER155 4.8 71.6 1.0
CD1 A:LEU281 4.8 52.2 1.0
CG A:LEU281 4.9 67.2 1.0
CA A:ASN277 4.9 50.8 1.0
OD1 A:ASN154 5.0 70.0 1.0
CA A:ALA153 5.0 67.8 1.0

Reference:

W.Zhang, K.Shi, H.Aihara, F.Li. Crystal Structure of Chimeric Rbd Complexed with Chimeric Mouse ACE2 To Be Published.
Page generated: Mon Aug 18 15:57:58 2025

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