Sodium in PDB 8uvg: Structure of NADC3-Dms Complex in Co-Ci Conformation

The binding sites of Sodium atom in the Structure of NADC3-Dms Complex in Co-Ci Conformation (pdb code 8uvg). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Structure of NADC3-Dms Complex in Co-Ci Conformation, PDB code: 8uvg:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Structure of NADC3-Dms Complex in Co-Ci Conformation


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of NADC3-Dms Complex in Co-Ci Conformation within 5.0Å range: probe atom residue distance (Å) B Occ A:Na701 b:57.3 occ:1.00 O A:LEU142 2.4 55.0 1.0 OD1 A:ASN144 2.4 59.5 1.0 O A:GLY252 2.4 53.5 1.0 N A:ASN144 2.9 59.5 1.0 CA A:SER143 3.0 58.5 1.0 O A:SER139 3.1 54.7 1.0 C A:SER143 3.1 58.5 1.0 C A:LEU142 3.3 55.0 1.0 CG A:ASN144 3.3 59.5 1.0 N A:SER143 3.6 58.5 1.0 C A:GLY252 3.6 53.5 1.0 CA A:ASN144 3.8 59.5 1.0 O A:SER143 4.0 58.5 1.0 C A:SER139 4.1 54.7 1.0 CB A:ASN144 4.2 59.5 1.0 ND2 A:ASN144 4.2 59.5 1.0 CB A:SER143 4.2 58.5 1.0 CA A:GLY252 4.3 53.5 1.0 CB A:SER139 4.4 54.7 1.0 CA A:SER139 4.4 54.7 1.0 CA A:GLY246 4.7 53.9 1.0 N A:THR253 4.7 51.5 1.0 CA A:LEU142 4.7 55.0 1.0 CA A:THR253 4.9 51.5 1.0 N A:LEU142 5.0 55.0 1.0

Sodium binding site 2 out of 2 in the Structure of NADC3-Dms Complex in Co-Ci Conformation


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Structure of NADC3-Dms Complex in Co-Ci Conformation within 5.0Å range: probe atom residue distance (Å) B Occ A:Na702 b:58.7 occ:1.00 O A:THR479 2.4 58.8 1.0 OD1 A:ASN484 2.4 54.5 1.0 O A:SER526 2.4 65.2 1.0 O A:ALA482 2.4 57.1 1.0 OG1 A:THR479 2.6 58.8 1.0 CG A:ASN484 3.4 54.5 1.0 C A:THR479 3.4 58.8 1.0 N A:ASN484 3.4 54.5 1.0 C A:SER526 3.5 65.2 1.0 C A:ALA482 3.6 57.1 1.0 CB A:ALA520 3.6 59.7 1.0 C A:SER483 3.7 54.0 1.0 OG1 A:THR527 3.7 66.5 1.0 CB A:THR479 3.8 58.8 1.0 CA A:SER483 3.8 54.0 1.0 CA A:THR479 3.9 58.8 1.0 CA A:SER526 4.0 65.2 1.0 CA A:ASN484 4.0 54.5 1.0 ND2 A:ASN484 4.2 54.5 1.0 N A:SER483 4.2 54.0 1.0 CB A:ASN484 4.3 54.5 1.0 O A:SER483 4.4 54.0 1.0 CB A:SER526 4.4 65.2 1.0 O A:CYS517 4.5 53.4 1.0 CG2 A:THR479 4.6 58.8 1.0 N A:GLU480 4.6 62.4 1.0 N A:THR527 4.6 66.5 1.0 N A:ALA482 4.7 57.1 1.0 CA A:ALA482 4.8 57.1 1.0 CB A:THR527 4.9 66.5 1.0 CA A:THR527 4.9 66.5 1.0 CA A:GLU480 5.0 62.4 1.0 CA A:ALA520 5.0 59.7 1.0

Y.Li, J.Song, V.Mikusevic, J.J.Marden, A.Becerril, H.Kuang, B.Wang, W.J.Rice, J.A.Mindell, D.N.Wang. Substrate Translocation and Inhibition in Human Dicarboxylate Transporter NADC3. Nat.Struct.Mol.Biol. 2024.
ISSN: ESSN 1545-9985
PubMed: 39622972
DOI: 10.1038/S41594-024-01433-0