Sodium in PDB, part 221 (files: 8801-8840),
PDB 6syr-6tcj
Experimental structures of coordination spheres of Sodium (Na) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Sodium atoms. PDB files: 8801-8840 (PDB 6syr-6tcj).
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6syr (Na: 1) - The Wild Type Glucuronoyl Esterase OTCE15A From Opitutus Terrae in Complex with D-Glucuronate
Other atoms:
Mg (1);
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6t3m (Na: 2) - Thrombin in Complex with A D-Phe-Pro-P-Phenol Derivative
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6t3n (Na: 7) - Structure of Oceanobacillus Iheyensis Group II Intron G-Mutant (C289G/C358G/G385C) in the Presence of Na+, MG2+ and 5'-Exon
Other atoms:
Mg (19);
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6t3q (Na: 2) - Thrombin in Complex with A D-Phe-Pro-2-Aminopyridine Derivative
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6t3s (Na: 8) - Structure of Oceanobacillus Iheyensis Group II Intron U-Mutant (C289U/C358U/G385A) in the Presence of Na+, MG2+ and 5'-Exon
Other atoms:
Mg (20);
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6t3w (Na: 2) - Coxsackie B3 2C Protein in Complex with S-Fluoxetine
Other atoms:
F (3);
Zn (1);
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6t46 (Na: 1) - Structure of the Rap Conjugation Gene Regulator of the Plasmid PLS20 in Complex with the Phr* Peptide
Other atoms:
Cl (3);
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6t4a (Na: 2) - Thrombin in Complex with A D-Phe-Pro-P-Aminopyridine Derivative
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6t4p (Na: 1) - Human Carbonic Anhydrase II Bound By Napthalene-1-Sulfonamide
Other atoms:
Zn (1);
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6t52 (Na: 2) - Thrombin in Complex with A D-Phe-Pro-Imidazole Derivative
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6t53 (Na: 2) - Thrombin in Complex with A D-Phe-Pro-P-Benzylamine Derivative
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6t54 (Na: 2) - Thrombin in Complex with A D-Phe-Pro-2-Bromothiophene Derivative
Other atoms:
Br (1);
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6t55 (Na: 2) - Thrombin in Complex with Methylbenzylamine
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6t56 (Na: 2) - Thrombin in Complex with Benzylamine
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6t57 (Na: 2) - Thrombin in Complex with A D-Phe-Pro-N-Amidinopiperidine Derivative
Other atoms:
F (3);
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6t5i (Na: 2) - The Transcriptional Regulator Prfa From Listeria Monocytogenes in Complex with Inhibitor of Wnt Production (Iwp)-2
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6t5x (Na: 1) - Crystal Structure of Salmonella Typhimurium Fabg in Complex with Nadph at 1.5 A Resolution
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6t6h (Na: 1) - Apo Structure of the Bottromycin Epimerase Both
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6t74 (Na: 2) - New Antiparallel Dimer of Aureochrome 1A Lov Domain Mutants From Phaeodactylum Tricornutum
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6t7h (Na: 2) - Crystal Structure of Thrombin in Complex with Macrocycle N14-PR4-A
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6t81 (Na: 1) - Human Carbonic Anhydrase II Bound By 2-Naphthalenesulfonamide.
Other atoms:
Zn (1);
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6t86 (Na: 1) - Urocanate Reductase in Complex with Fad
Other atoms:
Cl (3);
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6t87 (Na: 1) - Urocanate Reductase in Complex with Urocanate
Other atoms:
Cl (2);
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6t88 (Na: 1) - Urocanate Reductase in Complex with Imidazole Propionate
Other atoms:
Cl (4);
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6t89 (Na: 2) - Thrombin in Complex with (S)-N-(Tert-Butyl)-4-(3-(3- Carbamimidoylphenyl)-2-((2',4'-Dimethoxy-[1,1'-Biphenyl])-3- Sulfonamido)Propanoyl)Piperazine-1-Carboxamide (Mi-498)
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6t8a (Na: 2) - Thrombin in Complex with Diphenyl ((4-Carbamimidoylphenyl)((S)-1-((R)- 3-Cyclohexyl 2-((Phenylmethyl)Sulfonamido)Propanoyl)Pyrrolidine-2- Carboxamido)Methyl)Phosphonate (Mi-492)
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6t96 (Na: 1) - Photorhabdus Laumondii Subsp. Laumondii Lectin PLL3
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6t99 (Na: 2) - Crystal Structrue of Rsl W31YW76Y Lectin Mutant in Complex with Alpha- Methylfucoside
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6ta7 (Na: 2) - Crystal Structure of Human G3BP1-NTF2 in Complex with Human CAPRIN1- Derived Solomon Motif
Other atoms:
Cl (1);
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6tb1 (Na: 2) - Crystal Structure of Thermostable Omega Transaminase 6-Fold Mutant From Pseudomonas Jessenii
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6tb7 (Na: 4) - Crystal Structure of the Adp-Binding Domain of the Nad+ Riboswitch with Adenosine Monophosphate (Amp)
Other atoms:
Mg (7);
Br (1);
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6tbf (Na: 35) - Structure of A Beta Galactosidase with Inhibitor
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6tbg (Na: 30) - Structure of A Beta Galactosidase with Inhibitor
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6tbh (Na: 32) - Structure of A Beta Galactosidase with Inhibitor
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6tbi (Na: 38) - Structure of A Beta Galactosidase with Inhibitor
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6tbj (Na: 27) - Structure of A Beta Galactosidase with Inhibitor
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6tbk (Na: 32) - Structure of A Beta Galactosidase with Inhibitor
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6tbn (Na: 1) - Crystal Structure of CIAO1-CIAO2B Cia Core Complex
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6tbt (Na: 1) - Crystal Structure of the BCL6 Btb Domain in Complex with An APT48 Peptide
Other atoms:
Mg (2);
Cl (5);
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6tcj (Na: 1) - Crystal Structure of the BCL6 Btb Domain in Complex with A Hybrid Btb- Binding (Hbp) Peptide
Page generated: Mon Aug 18 07:16:31 2025
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