Sodium in PDB 7w61: Crystal Structure of Farnesol Dehydrogenase From Helicoverpa Armigera

The structure of Crystal Structure of Farnesol Dehydrogenase From Helicoverpa Armigera, PDB code: 7w61 was solved by R.Kumar, J.Das, J.K.Mahto, M.Sharma, P.Kumar, A.K.Sharma, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.52 / 1.60
Space group	I 2 3
Cell size a, b, c (Å), α, β, γ (°)	118.016, 118.016, 118.016, 90, 90, 90
R / Rfree (%)	16.8 / 19.3

The binding sites of Sodium atom in the Crystal Structure of Farnesol Dehydrogenase From Helicoverpa Armigera (pdb code 7w61). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Farnesol Dehydrogenase From Helicoverpa Armigera, PDB code: 7w61:

Sodium binding site 1 out of 1 in the Crystal Structure of Farnesol Dehydrogenase From Helicoverpa Armigera


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Farnesol Dehydrogenase From Helicoverpa Armigera within 5.0Å range: probe atom residue distance (Å) B Occ A:Na308 b:19.7 occ:1.00 OD1 A:ASN233 2.7 12.8 1.0 N A:ILE234 2.9 6.1 1.0 O A:VAL189 3.0 5.6 1.0 CA A:ASN233 3.2 7.1 1.0 OG1 A:THR190 3.2 5.4 1.0 O A:ILE234 3.2 5.1 1.0 CB A:ASN233 3.4 8.5 1.0 CG A:ASN233 3.4 10.5 1.0 C A:ASN233 3.4 6.8 1.0 C A:VAL189 3.5 5.1 1.0 N A:VAL189 3.6 5.2 1.0 C A:ILE234 3.6 5.2 1.0 CB A:LYS188 3.7 6.3 1.0 NE2 A:HIS141 3.8 6.0 1.0 CA A:ILE234 3.9 5.6 1.0 CE A:LYS188 4.0 8.1 1.0 N A:THR190 4.2 5.0 1.0 CA A:VAL189 4.2 5.3 1.0 CA A:LYS188 4.2 5.7 1.0 C A:LYS188 4.2 5.5 1.0 CG A:LYS188 4.3 6.8 1.0 CE1 A:HIS141 4.3 5.7 1.0 N A:ASN235 4.3 5.1 1.0 CB A:THR190 4.4 5.3 1.0 CA A:THR190 4.4 5.0 1.0 N A:ASN233 4.6 6.5 1.0 CB A:ILE234 4.6 5.8 1.0 O A:ASN233 4.6 7.2 1.0 CD2 A:HIS141 4.6 5.5 1.0 ND2 A:ASN233 4.7 11.5 1.0 O A:VAL232 4.7 7.2 1.0 CD A:LYS188 4.8 7.8 1.0 CA A:ASN235 4.8 5.1 1.0

R.Kumar, J.Das, J.K.Mahto, M.Sharma, S.Vivek, P.Kumar, A.K.Sharma. Crystal Structure and Molecular Characterization of Nadp + -Farnesol Dehydrogenase From Cotton Bollworm, Helicoverpaarmigera. Insect Biochem.Mol.Biol. V. 147 03812 2022.
ISSN: ISSN 0965-1748
PubMed: 35820537
DOI: 10.1016/J.IBMB.2022.103812