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Sodium in PDB 7g6z: Crystal Structure of Rat Autotaxin in Complex with 2-Chloro-7-[(4- Fluorophenyl)Methyl]-9-Methylpurin-8-One

Enzymatic activity of Crystal Structure of Rat Autotaxin in Complex with 2-Chloro-7-[(4- Fluorophenyl)Methyl]-9-Methylpurin-8-One

All present enzymatic activity of Crystal Structure of Rat Autotaxin in Complex with 2-Chloro-7-[(4- Fluorophenyl)Methyl]-9-Methylpurin-8-One:
3.1.4.39;

Protein crystallography data

The structure of Crystal Structure of Rat Autotaxin in Complex with 2-Chloro-7-[(4- Fluorophenyl)Methyl]-9-Methylpurin-8-One, PDB code: 7g6z was solved by M.Stihle, J.Benz, D.Hunziker, M.G.Rudolph, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.99 / 1.53
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 84.304, 92.277, 120.397, 90, 90, 90
R / Rfree (%) 20.8 / 24

Other elements in 7g6z:

The structure of Crystal Structure of Rat Autotaxin in Complex with 2-Chloro-7-[(4- Fluorophenyl)Methyl]-9-Methylpurin-8-One also contains other interesting chemical elements:

Zinc (Zn) 1 atom
Chlorine (Cl) 2 atoms
Potassium (K) 1 atom
Calcium (Ca) 1 atom
Fluorine (F) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Rat Autotaxin in Complex with 2-Chloro-7-[(4- Fluorophenyl)Methyl]-9-Methylpurin-8-One (pdb code 7g6z). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Rat Autotaxin in Complex with 2-Chloro-7-[(4- Fluorophenyl)Methyl]-9-Methylpurin-8-One, PDB code: 7g6z:

Sodium binding site 1 out of 1 in 7g6z

Go back to Sodium Binding Sites List in 7g6z
Sodium binding site 1 out of 1 in the Crystal Structure of Rat Autotaxin in Complex with 2-Chloro-7-[(4- Fluorophenyl)Methyl]-9-Methylpurin-8-One


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Rat Autotaxin in Complex with 2-Chloro-7-[(4- Fluorophenyl)Methyl]-9-Methylpurin-8-One within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na906

b:25.2
occ:1.00
 OG A:SER807 2.3 18.9 1.0
O A:HOH1485 2.3 32.8 1.0
O A:ASN801 2.5 17.0 1.0
O A:HOH1371 2.5 28.6 1.0
O A:SER804 2.5 17.6 1.0
O A:HOH1180 2.5 25.7 1.0
C A:ASN801 3.4 16.6 1.0
CB A:SER807 3.4 18.3 1.0
C A:SER804 3.6 15.9 1.0
CA A:ASP802 3.8 18.7 1.0
N A:ASP802 3.9 17.6 1.0
O A:HOH1549 4.0 38.7 1.0
N A:SER807 4.1 20.2 1.0
O A:HOH1118 4.2 29.1 1.0
C A:ASP802 4.2 18.1 1.0
O A:ASP802 4.3 16.5 1.0
CA A:CYS805 4.3 19.5 1.0
CA A:SER807 4.3 20.0 1.0
CB A:ASN801 4.3 17.2 1.0
N A:CYS805 4.4 16.1 1.0
N A:SER804 4.4 14.1 1.0
CA A:ASN801 4.4 16.3 1.0
C A:CYS805 4.4 19.5 1.0
CA A:SER804 4.5 14.3 1.0
O A:CYS805 4.5 19.7 1.0
OD1 A:ASP802 4.6 26.3 1.0
O A:HOH1206 4.7 26.3 1.0
CB A:SER804 4.8 16.6 1.0
O A:HOH1307 4.9 29.7 1.0
N A:ASN806 5.0 19.9 1.0

Reference:

D.Hunziker, S.C.Joachim, C.Ullmer, M.G.Rudolph. Crystal Structure of A Rat Autotaxin Complex To Be Published.
Page generated: Sat Feb 8 23:32:56 2025

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