Atomistry » Sodium » PDB 7b7h-7bov » 7bhn
Atomistry »
  Sodium »
    PDB 7b7h-7bov »
      7bhn »

Sodium in PDB 7bhn: Crystal Structure of Hen Egg White Lysozyme Using Drop-on-Drop Sfx Method - 2 S Mixing with N-Acetyl-D-Glucosamine.

Enzymatic activity of Crystal Structure of Hen Egg White Lysozyme Using Drop-on-Drop Sfx Method - 2 S Mixing with N-Acetyl-D-Glucosamine.

All present enzymatic activity of Crystal Structure of Hen Egg White Lysozyme Using Drop-on-Drop Sfx Method - 2 S Mixing with N-Acetyl-D-Glucosamine.:
3.2.1.17;

Protein crystallography data

The structure of Crystal Structure of Hen Egg White Lysozyme Using Drop-on-Drop Sfx Method - 2 S Mixing with N-Acetyl-D-Glucosamine., PDB code: 7bhn was solved by A.Butryn, A.M.Orville, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.23 / 1.45
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.804, 78.804, 38.002, 90, 90, 90
R / Rfree (%) 18.1 / 19.4

Other elements in 7bhn:

The structure of Crystal Structure of Hen Egg White Lysozyme Using Drop-on-Drop Sfx Method - 2 S Mixing with N-Acetyl-D-Glucosamine. also contains other interesting chemical elements:

Chlorine (Cl) 4 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Hen Egg White Lysozyme Using Drop-on-Drop Sfx Method - 2 S Mixing with N-Acetyl-D-Glucosamine. (pdb code 7bhn). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Hen Egg White Lysozyme Using Drop-on-Drop Sfx Method - 2 S Mixing with N-Acetyl-D-Glucosamine., PDB code: 7bhn:

Sodium binding site 1 out of 1 in 7bhn

Go back to Sodium Binding Sites List in 7bhn
Sodium binding site 1 out of 1 in the Crystal Structure of Hen Egg White Lysozyme Using Drop-on-Drop Sfx Method - 2 S Mixing with N-Acetyl-D-Glucosamine.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Hen Egg White Lysozyme Using Drop-on-Drop Sfx Method - 2 S Mixing with N-Acetyl-D-Glucosamine. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na206

b:24.8
occ:1.00
 O A:SER60 2.4 24.7 1.0
O A:CYS64 2.4 22.2 1.0
O A:HOH358 2.4 31.8 1.0
O A:HOH331 2.5 27.6 1.0
OG A:SER72 2.5 30.3 1.0
O A:ARG73 2.5 29.2 1.0
CB A:SER72 3.3 27.4 1.0
C A:CYS64 3.5 20.0 1.0
C A:SER60 3.5 21.1 1.0
C A:ARG73 3.5 28.0 1.0
CA A:ASN65 3.9 22.6 1.0
N A:ARG73 4.0 25.5 1.0
C A:SER72 4.1 35.8 1.0
N A:ASN65 4.1 20.8 1.0
CA A:SER60 4.1 19.2 1.0
CB A:SER60 4.3 18.6 1.0
CA A:SER72 4.3 28.7 1.0
CA A:ARG73 4.4 29.3 1.0
N A:ASN74 4.4 26.2 1.0
N A:CYS64 4.4 21.0 1.0
O A:SER72 4.5 33.4 1.0
CA A:ASN74 4.6 24.9 1.0
C A:ARG61 4.6 24.1 1.0
CA A:CYS64 4.6 21.5 1.0
N A:ARG61 4.6 19.3 1.0
O A:ARG61 4.6 25.3 1.0
CB A:THR69 4.7 24.6 1.0
CB A:ASN74 4.7 25.3 1.0
N A:ASP66 4.7 19.8 1.0
CL A:CL204 4.8 40.9 1.0
OD1 A:ASN65 4.8 32.1 1.0
CB A:ASN65 4.8 24.5 1.0
N A:TRP62 4.8 22.6 1.0
CA A:ARG61 4.8 26.0 1.0
O A:HOH376 4.9 48.0 1.0
O A:THR69 4.9 29.1 1.0
C A:ASN65 4.9 20.5 1.0
O A:HOH368 4.9 44.3 1.0

Reference:

A.Butryn, P.S.Simon, P.Aller, P.Hinchliffe, R.N.Massad, G.Leen, C.L.Tooke, I.Bogacz, I.-S.Kim, A.Bhowmick, A.S.Brewster, N.E.Devenish, J.Brem, J.J.A.G.Kamps, P.A.Lang, P.Rabe, D.Axford, J.H.Beale, B.Davy, A.Ebrahim, J.Orlans, S.L.S.Storm, T.Zhou, S.Owada, R.Tanaka, K.Tono, G.Evans, R.L.Owen, F.A.Houle, N.K.Sauter, C.J.Schofield, J.Spencer, V.K.Yachandra, J.Yano, J.F.Kern, A.M.Orville. An on-Demand, Drop-on-Drop Method For Studying Enzyme Catalysis By Serial Crystallography. To Be Published.
Page generated: Tue Oct 8 16:14:13 2024

Last articles

Mg in 3WZX
Mg in 3WYM
Mg in 3WZW
Mg in 3WZV
Mg in 3WYL
Mg in 3WVL
Mg in 3WYK
Mg in 3WYI
Mg in 3WYF
Mg in 3WYG
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy