Sodium in PDB 7bfv: Thermogutta Terrifontis Esterase 2 Phosphonylated By Cyclosarin

All present enzymatic activity of Thermogutta Terrifontis Esterase 2 Phosphonylated By Cyclosarin:
3.1.1.1;

The structure of Thermogutta Terrifontis Esterase 2 Phosphonylated By Cyclosarin, PDB code: 7bfv was solved by X.B.Brazzolotto, J.Bzdrenga, F.Nachon, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	33.87 / 1.84
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	55.83, 67.74, 74.52, 90, 90, 90
R / Rfree (%)	18 / 22.7

The binding sites of Sodium atom in the Thermogutta Terrifontis Esterase 2 Phosphonylated By Cyclosarin (pdb code 7bfv). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Thermogutta Terrifontis Esterase 2 Phosphonylated By Cyclosarin, PDB code: 7bfv:

Sodium binding site 1 out of 1 in the Thermogutta Terrifontis Esterase 2 Phosphonylated By Cyclosarin


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Thermogutta Terrifontis Esterase 2 Phosphonylated By Cyclosarin within 5.0Å range: probe atom residue distance (Å) B Occ A:Na300 b:66.9 occ:1.00 OE2 A:GLU16 2.4 55.4 1.0 O A:HOH533 2.7 59.9 1.0 CD A:GLU16 3.2 60.5 1.0 O A:HOH478 3.2 53.0 1.0 CG A:GLU16 3.4 46.9 1.0 O A:GLY14 4.2 55.6 1.0 OE1 A:GLU16 4.3 54.3 1.0 CB A:GLU16 4.6 39.1 1.0 CB A:LYS34 4.7 51.0 1.0 CD A:LYS34 4.7 57.9 1.0 O A:HOH492 4.9 60.8 1.0 N A:GLU16 5.0 42.3 1.0

J.Bzdrenga, E.Trenet, F.Chantegreil, K.Bernal, F.Nachon, X.Brazzolotto. A Thermophilic Bacterial Esterase For Scavenging Nerve Agents: A Kinetic, Biophysical and Structural Study. Molecules V. 26 2021.
ISSN: ESSN 1420-3049
PubMed: 33513869
DOI: 10.3390/MOLECULES26030657