Sodium in PDB 7bcz: Structure of the 4'-Phosphopantetheinyl Transferase Pcps From Pseudomonas Aeruginosa

The structure of Structure of the 4'-Phosphopantetheinyl Transferase Pcps From Pseudomonas Aeruginosa, PDB code: 7bcz was solved by C.Carivenc, L.Mourey, J.D.Pedelacq, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	42.49 / 2.40
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	44.359, 78.872, 81.123, 85.62, 84.62, 73.86
R / Rfree (%)	21 / 26.2

The structure of Structure of the 4'-Phosphopantetheinyl Transferase Pcps From Pseudomonas Aeruginosa also contains other interesting chemical elements:

Magnesium

(Mg)

1 atom

The binding sites of Sodium atom in the Structure of the 4'-Phosphopantetheinyl Transferase Pcps From Pseudomonas Aeruginosa (pdb code 7bcz). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of the 4'-Phosphopantetheinyl Transferase Pcps From Pseudomonas Aeruginosa, PDB code: 7bcz:

Sodium binding site 1 out of 1 in the Structure of the 4'-Phosphopantetheinyl Transferase Pcps From Pseudomonas Aeruginosa


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of the 4'-Phosphopantetheinyl Transferase Pcps From Pseudomonas Aeruginosa within 5.0Å range: probe atom residue distance (Å) B Occ D:Na302 b:66.8 occ:1.00 O D:ARG18 2.4 33.1 1.0 OG D:SER32 2.6 26.5 1.0 CD2 D:LEU30 3.3 30.3 1.0 CB D:SER32 3.6 23.8 1.0 C D:ARG18 3.6 34.1 1.0 O D:ASP16 3.8 38.5 1.0 CD D:PRO20 3.9 35.7 1.0 CG D:PRO20 3.9 32.1 1.0 N D:ARG18 4.0 34.4 1.0 CG D:ASP16 4.1 33.7 1.0 CB D:ASP16 4.1 31.0 1.0 OD1 D:ASP16 4.3 37.9 1.0 N D:SER32 4.3 30.3 1.0 C D:ASP16 4.3 32.2 1.0 CA D:ARG18 4.3 34.6 1.0 OD2 D:ASP16 4.3 35.4 1.0 CB D:PRO20 4.3 32.8 1.0 N D:PRO20 4.5 36.7 1.0 CA D:SER32 4.5 29.2 1.0 O D:HOH420 4.5 41.5 1.0 C D:ASP17 4.7 33.5 1.0 N D:TRP19 4.7 38.0 1.0 CB D:ARG18 4.7 34.7 1.0 N D:ASP17 4.9 28.6 1.0 CG D:LEU30 4.9 33.6 1.0 CA D:ASP16 4.9 32.0 1.0 CA D:TRP19 4.9 37.6 1.0 C D:TRP19 4.9 36.2 1.0

C.Carivenc, L.Maveyraud, C.Blanger, S.Ballereau, C.Roy-Camille, M.C.Nguyen, Y.Genisson, C.Guilhot, C.Chalut, J.D.Pedelacq, L.Mourey. Phosphopantetheinyl Transferase Binding and Inhibition By Amidino-Urea and Hydroxypyrimidinethione Compounds. Sci Rep V. 11 18042 2021.
ISSN: ESSN 2045-2322
PubMed: 34508141
DOI: 10.1038/S41598-021-97197-4