Sodium in PDB 7any: Structure of the Laspartomycin C Friulimicin-Like Mutant in Complex with Geranyl Phosphate

The structure of Structure of the Laspartomycin C Friulimicin-Like Mutant in Complex with Geranyl Phosphate, PDB code: 7any was solved by M.R.Zeronian, N.M.Pearce, M.Lutz, T.M.Wood, N.I.Martin, B.J.C.Janssen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	34.76 / 1.14
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	40.132, 68.321, 40.132, 90, 120, 90
R / Rfree (%)	16 / 19.2

The structure of Structure of the Laspartomycin C Friulimicin-Like Mutant in Complex with Geranyl Phosphate also contains other interesting chemical elements:

Chlorine	(Cl)	14 atoms
Cadmium	(Cd)	3 atoms
Calcium	(Ca)	42 atoms

The binding sites of Sodium atom in the Structure of the Laspartomycin C Friulimicin-Like Mutant in Complex with Geranyl Phosphate (pdb code 7any). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of the Laspartomycin C Friulimicin-Like Mutant in Complex with Geranyl Phosphate, PDB code: 7any:

Sodium binding site 1 out of 1 in the Structure of the Laspartomycin C Friulimicin-Like Mutant in Complex with Geranyl Phosphate


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of the Laspartomycin C Friulimicin-Like Mutant in Complex with Geranyl Phosphate within 5.0Å range: probe atom residue distance (Å) B Occ J:Na107 b:14.2 occ:1.00 O J:HOH204 2.3 16.4 1.0 O J:ASP5 2.3 10.2 1.0 C J:ASP5 3.4 8.1 1.0 CA J:GLY6 4.3 8.4 1.0 N J:GLY6 4.3 7.5 1.0 CA J:ASP5 4.3 8.8 1.0 CB J:ASP5 4.4 9.1 1.0 O J:ASP7 4.6 9.2 1.0 C J:GLY6 4.7 7.1 1.0 CG J:ASP5 4.8 8.7 1.0

T.M.Wood, M.R.Zeronian, N.Buijs, K.Bertheussen, H.K.Abedian, A.V.Johnson, N.M.Pearce, M.Lutz, J.Kemmink, T.Seirsma, L.W.Hamoen, B.J.C.Janssen, N.I.Martin. Mechanistic Insights Into the C55-P Targeting Lipopeptide Antibiotics Revealed By Structure-Activity Studies and High-Resolution Crystal Structures Chem Sci V. 13 2985 2022.
ISSN: ESSN 2041-6539
DOI: 10.1039/D1SC07190D