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Sodium in PDB 7ac2: Structure of Hen Egg White Lysozyme Collected By Rotation Serial Crystallography on A Coc Membrane at A Synchrotron Source

Enzymatic activity of Structure of Hen Egg White Lysozyme Collected By Rotation Serial Crystallography on A Coc Membrane at A Synchrotron Source

All present enzymatic activity of Structure of Hen Egg White Lysozyme Collected By Rotation Serial Crystallography on A Coc Membrane at A Synchrotron Source:
3.2.1.17;

Protein crystallography data

The structure of Structure of Hen Egg White Lysozyme Collected By Rotation Serial Crystallography on A Coc Membrane at A Synchrotron Source, PDB code: 7ac2 was solved by I.Martiel, C.Padeste, A.Karpik, C.Y.Huang, L.Vera, M.Wang, M.Marsh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.51 / 1.51
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 79.02, 79.02, 37.08, 90, 90, 90
R / Rfree (%) 18 / 20.9

Other elements in 7ac2:

The structure of Structure of Hen Egg White Lysozyme Collected By Rotation Serial Crystallography on A Coc Membrane at A Synchrotron Source also contains other interesting chemical elements:

Chlorine (Cl) 5 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Structure of Hen Egg White Lysozyme Collected By Rotation Serial Crystallography on A Coc Membrane at A Synchrotron Source (pdb code 7ac2). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of Hen Egg White Lysozyme Collected By Rotation Serial Crystallography on A Coc Membrane at A Synchrotron Source, PDB code: 7ac2:

Sodium binding site 1 out of 1 in 7ac2

Go back to Sodium Binding Sites List in 7ac2
Sodium binding site 1 out of 1 in the Structure of Hen Egg White Lysozyme Collected By Rotation Serial Crystallography on A Coc Membrane at A Synchrotron Source


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of Hen Egg White Lysozyme Collected By Rotation Serial Crystallography on A Coc Membrane at A Synchrotron Source within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na205

b:28.5
occ:1.00
 O A:HOH381 2.4 28.7 1.0
O A:SER60 2.4 29.9 1.0
O A:CYS64 2.4 25.3 1.0
O A:ARG73 2.5 29.5 1.0
O A:HOH338 2.5 25.6 1.0
OG A:SER72 2.5 32.2 1.0
CB A:SER72 3.2 29.3 1.0
C A:ARG73 3.5 33.5 1.0
C A:SER60 3.5 26.0 1.0
C A:CYS64 3.6 27.8 1.0
CA A:ASN65 3.9 24.1 1.0
N A:ARG73 4.0 31.3 1.0
CA A:SER60 4.1 22.5 1.0
C A:SER72 4.2 33.1 1.0
N A:ASN65 4.2 23.4 1.0
CB A:SER60 4.3 23.8 1.0
CA A:ARG73 4.3 32.4 1.0
CA A:SER72 4.3 31.3 1.0
N A:ASN74 4.4 30.6 1.0
O A:HOH387 4.4 50.1 1.0
N A:CYS64 4.5 26.2 1.0
O A:ARG61 4.5 29.1 1.0
CA A:ASN74 4.5 26.7 1.0
C A:ARG61 4.5 26.4 1.0
N A:ARG61 4.6 23.6 1.0
N A:ASP66 4.6 24.3 1.0
OD1 A:ASN65 4.7 31.2 1.0
CB A:THR69 4.7 27.1 1.0
CA A:CYS64 4.7 26.3 1.0
CB A:ASN74 4.7 25.7 1.0
CL A:CL204 4.7 31.4 1.0
O A:SER72 4.7 34.3 1.0
CA A:ARG61 4.8 26.2 1.0
CB A:ASN65 4.8 26.4 1.0
N A:TRP62 4.8 28.4 1.0
C A:ASN65 4.8 26.1 1.0
OG A:SER60 5.0 24.5 1.0

Reference:

I.Martiel, J.H.Beale, A.Karpik, C.Y.Huang, L.Vera, N.Olieric, M.Wranik, C.J.Tsai, J.Muhle, O.Aurelius, J.John, M.Hogbom, M.Wang, M.Marsh, C.Padeste. Versatile Microporous Polymer-Based Supports For Serial Macromolecular Crystallography Acta Crystallogr.,Sect.D 2021.
ISSN: ESSN 1399-0047
DOI: 10.1107/S2059798321007324
Page generated: Tue Oct 8 15:50:45 2024

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