Sodium in PDB 6zhp: Crystal Structure of Ompf Porin Soaked in Ciprofloxacin Metaloantibiotic

The structure of Crystal Structure of Ompf Porin Soaked in Ciprofloxacin Metaloantibiotic, PDB code: 6zhp was solved by C.F.Sousa, J.Morais-Cabral, P.Gameiro, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.46 / 2.05
Space group	P 3 2 1
Cell size a, b, c (Å), α, β, γ (°)	135.943, 135.943, 51.86, 90, 90, 120
R / Rfree (%)	17.9 / 20.7

The structure of Crystal Structure of Ompf Porin Soaked in Ciprofloxacin Metaloantibiotic also contains other interesting chemical elements:

Magnesium

(Mg)

1 atom

The binding sites of Sodium atom in the Crystal Structure of Ompf Porin Soaked in Ciprofloxacin Metaloantibiotic (pdb code 6zhp). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Ompf Porin Soaked in Ciprofloxacin Metaloantibiotic, PDB code: 6zhp:

Sodium binding site 1 out of 1 in the Crystal Structure of Ompf Porin Soaked in Ciprofloxacin Metaloantibiotic


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Ompf Porin Soaked in Ciprofloxacin Metaloantibiotic within 5.0Å range: probe atom residue distance (Å) B Occ B:Na404 b:57.5 occ:1.00 O B:GLN225 2.3 45.2 1.0 O B:HOH589 2.4 53.1 1.0 O B:GLY228 2.5 44.4 1.0 O B:HOH640 2.6 56.9 1.0 O B:GLU223 2.9 47.1 1.0 C B:GLN225 3.5 41.9 1.0 C B:GLY228 3.7 43.3 1.0 C B:GLU223 4.0 46.7 1.0 O B:PRO226 4.0 40.9 1.0 O B:HOH508 4.1 40.6 1.0 C B:PRO226 4.1 43.5 1.0 N B:GLN225 4.2 39.7 1.0 CA B:PRO226 4.3 40.4 1.0 CA B:ASN229 4.3 42.5 1.0 N B:PRO226 4.4 41.2 1.0 O B:LEU227 4.4 38.5 1.0 CA B:GLN225 4.4 42.1 1.0 C B:LEU227 4.5 42.5 1.0 N B:ASN229 4.5 36.6 1.0 C B:ALA224 4.5 46.3 1.0 CB B:ASN229 4.6 46.4 1.0 N B:GLY228 4.6 36.8 1.0 N B:LEU227 4.7 40.4 1.0 CA B:GLY228 4.7 38.0 1.0 CA B:GLU223 4.7 44.1 1.0 O B:GLN222 4.7 38.3 1.0 OD1 B:ASN229 4.8 54.7 1.0 N B:ALA224 4.9 38.0 1.0 O B:ALA224 4.9 44.2 1.0

C.F.Sousa, J.Morais-Cabral, P.Gameiro. Crystal Structure of Ompf Porin Soaked in Ciprofloxacin Metaloantibiotic To Be Published.