Sodium in PDB 6zdi: 17BETA-Hydroxysteroid Dehydrogenase Type 14 Variant S205 in Complex with 2-Fluoro-5-Nitrophenol

The structure of 17BETA-Hydroxysteroid Dehydrogenase Type 14 Variant S205 in Complex with 2-Fluoro-5-Nitrophenol, PDB code: 6zdi was solved by M.J.Badran, A.Heine, G.Klebe, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.34 / 2.13
Space group	I 4 2 2
Cell size a, b, c (Å), α, β, γ (°)	91.254, 91.254, 133.167, 90, 90, 90
R / Rfree (%)	21.1 / 26.2

The structure of 17BETA-Hydroxysteroid Dehydrogenase Type 14 Variant S205 in Complex with 2-Fluoro-5-Nitrophenol also contains other interesting chemical elements:

Fluorine

(F)

1 atom

The binding sites of Sodium atom in the 17BETA-Hydroxysteroid Dehydrogenase Type 14 Variant S205 in Complex with 2-Fluoro-5-Nitrophenol (pdb code 6zdi). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the 17BETA-Hydroxysteroid Dehydrogenase Type 14 Variant S205 in Complex with 2-Fluoro-5-Nitrophenol, PDB code: 6zdi:

Sodium binding site 1 out of 1 in the 17BETA-Hydroxysteroid Dehydrogenase Type 14 Variant S205 in Complex with 2-Fluoro-5-Nitrophenol


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of 17BETA-Hydroxysteroid Dehydrogenase Type 14 Variant S205 in Complex with 2-Fluoro-5-Nitrophenol within 5.0Å range: probe atom residue distance (Å) B Occ A:Na302 b:31.2 occ:1.00 O A:HOH447 2.3 21.2 0.5 O A:LEU53 2.4 25.6 1.0 O A:HOH447 2.4 28.3 0.5 O A:GLU50 2.4 31.3 1.0 O A:ALA56 2.5 28.5 1.0 O A:PRO54 3.1 24.0 0.5 C A:LEU53 3.4 29.0 1.0 C A:GLU50 3.5 32.0 1.0 C A:PRO54 3.6 26.2 0.5 C A:ALA56 3.7 30.6 1.0 CA A:PRO54 3.8 27.9 0.5 CA A:PRO54 3.8 28.2 0.5 N A:PRO54 4.0 29.3 0.5 N A:PRO54 4.0 29.2 0.5 CG A:GLU50 4.0 33.0 1.0 N A:ALA56 4.0 26.6 1.0 N A:GLY55 4.1 25.3 0.5 CA A:GLU50 4.1 30.4 1.0 C A:PRO54 4.4 25.9 0.5 CA A:ALA56 4.4 28.4 1.0 N A:LEU53 4.5 27.4 1.0 CA A:LEU53 4.5 25.7 1.0 CB A:GLU50 4.6 30.6 1.0 N A:GLY55 4.6 25.2 0.5 N A:GLN51 4.7 29.0 1.0 N A:VAL57 4.7 29.2 1.0 CG1 A:VAL57 4.9 28.0 1.0 C A:GLY55 4.9 26.6 0.5 CB A:ALA56 4.9 24.9 1.0 CA A:GLN51 5.0 27.7 1.0 CA A:VAL57 5.0 30.7 1.0 C A:GLN51 5.0 30.0 1.0

M.J.Badran, A.Heine, G.Klebe. 17BETA-Hydroxysteroid Dehydrogenase Type 14 Variant S205 in Complex with 2-Fluoro-5-Nitrophenol To Be Published.