Sodium in PDB 6xrx: Crystal Structure of the Mosquito Protein AZ1 As An Mbp Fusion

The structure of Crystal Structure of the Mosquito Protein AZ1 As An Mbp Fusion, PDB code: 6xrx was solved by L.C.Pedersen, G.A.Mueller, A.C.Y.Foo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	33.82 / 1.95
Space group	P 62
Cell size a, b, c (Å), α, β, γ (°)	113.013, 113.013, 83.442, 90, 90, 120
R / Rfree (%)	17.7 / 20.1

The structure of Crystal Structure of the Mosquito Protein AZ1 As An Mbp Fusion also contains other interesting chemical elements:

Chlorine

(Cl)

2 atoms

The binding sites of Sodium atom in the Crystal Structure of the Mosquito Protein AZ1 As An Mbp Fusion (pdb code 6xrx). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of the Mosquito Protein AZ1 As An Mbp Fusion, PDB code: 6xrx:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Crystal Structure of the Mosquito Protein AZ1 As An Mbp Fusion


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the Mosquito Protein AZ1 As An Mbp Fusion within 5.0Å range: probe atom residue distance (Å) B Occ A:Na1301 b:42.8 occ:1.00 O A:HOH1895 2.2 26.6 1.0 O A:HOH1441 2.5 42.1 1.0 O A:HOH1651 2.5 30.2 1.0 O A:HOH1819 2.6 39.6 1.0 OG1 A:THR193 3.7 25.1 1.0 OD1 A:ASP358 4.3 34.0 1.0 OD2 A:ASP358 4.5 38.0 1.0 CG2 A:THR193 4.6 25.5 1.0 CB A:THR193 4.6 24.1 1.0 O A:HOH1637 4.6 38.3 1.0 CB A:LYS189 4.8 26.2 1.0 O A:HOH1420 4.8 32.4 1.0 CG A:ASP358 4.8 37.2 1.0

Sodium binding site 2 out of 2 in the Crystal Structure of the Mosquito Protein AZ1 As An Mbp Fusion


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of the Mosquito Protein AZ1 As An Mbp Fusion within 5.0Å range: probe atom residue distance (Å) B Occ A:Na1302 b:22.4 occ:0.54 O A:HOH1464 2.2 23.4 1.0 O A:HOH1593 2.2 17.7 1.0 O A:HOH1488 2.4 10.5 1.0 O A:HOH1792 3.6 34.8 1.0 N A:ALA82 3.9 9.5 1.0 O A:HOH1763 4.0 38.8 1.0 OE1 A:GLU281 4.0 12.8 1.0 O A:THR80 4.1 10.7 1.0 OE2 A:GLU281 4.2 11.6 1.0 O A:HOH1903 4.3 10.2 0.5 CB A:ALA82 4.4 9.2 1.0 CD A:GLU281 4.5 12.8 1.0 CA A:PRO81 4.5 10.2 1.0 C A:PRO81 4.6 9.6 1.0 CA A:ALA82 4.7 9.1 1.0

A.C.Y.Foo, P.M.Thompson, S.H.Chen, R.Jadi, B.Lupo, E.F.Derose, S.Arora, V.C.Placentra, L.Premkumar, L.Perera, L.C.Pedersen, N.Martin, G.A.Mueller. The Mosquito Protein AEG12 Displays Both Cytolytic and Antiviral Properties Via A Common Lipid Transfer Mechanism. Proc.Natl.Acad.Sci.Usa V. 118 2021.
ISSN: ESSN 1091-6490
PubMed: 33688047
DOI: 10.1073/PNAS.2019251118