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Sodium in PDB 6xep: Crystal Structure of Thiamine-Monophosphate Kinase From Stenotrophomonas Maltophilia K279A

Enzymatic activity of Crystal Structure of Thiamine-Monophosphate Kinase From Stenotrophomonas Maltophilia K279A

All present enzymatic activity of Crystal Structure of Thiamine-Monophosphate Kinase From Stenotrophomonas Maltophilia K279A:
2.7.4.16;

Protein crystallography data

The structure of Crystal Structure of Thiamine-Monophosphate Kinase From Stenotrophomonas Maltophilia K279A, PDB code: 6xep was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.41 / 1.80
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 80.440, 88.810, 44.270, 90.00, 90.00, 90.00
R / Rfree (%) 16.6 / 20.4

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Thiamine-Monophosphate Kinase From Stenotrophomonas Maltophilia K279A (pdb code 6xep). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Thiamine-Monophosphate Kinase From Stenotrophomonas Maltophilia K279A, PDB code: 6xep:

Sodium binding site 1 out of 1 in 6xep

Go back to Sodium Binding Sites List in 6xep
Sodium binding site 1 out of 1 in the Crystal Structure of Thiamine-Monophosphate Kinase From Stenotrophomonas Maltophilia K279A


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Thiamine-Monophosphate Kinase From Stenotrophomonas Maltophilia K279A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na403

b:24.6
occ:1.00
 O A:ILE22 2.3 23.8 1.0
O A:ARG19 2.4 27.5 1.0
O A:THR16 2.4 22.5 1.0
O A:HOH758 2.8 24.6 0.5
C A:ILE22 3.5 20.5 1.0
C A:ARG19 3.5 24.8 1.0
C A:THR16 3.6 23.1 1.0
O A:HOH758 4.0 26.6 0.5
O A:LEU17 4.1 34.7 1.0
N A:ARG19 4.1 29.7 1.0
C A:LEU17 4.2 28.3 1.0
CA A:LEU17 4.2 24.3 1.0
CA A:ARG19 4.3 23.4 1.0
CA A:ILE22 4.3 17.6 1.0
N A:ILE22 4.3 17.5 1.0
N A:LEU17 4.4 22.5 1.0
CB A:ILE22 4.4 17.1 1.0
N A:LEU23 4.5 18.4 1.0
N A:ASP20 4.5 23.9 1.0
CA A:ASP20 4.5 27.4 0.4
CA A:ASP20 4.6 27.4 0.6
CA A:THR16 4.6 18.6 1.0
CA A:LEU23 4.6 20.5 1.0
CB A:ARG19 4.6 19.4 1.0
CB A:THR16 4.8 18.8 1.0
N A:GLU18 4.8 25.8 1.0
C A:ASP20 4.9 26.9 1.0
N A:LEU24 4.9 21.6 1.0

Reference:

J.Abendroth, P.S.Horanyi, D.D.Lorimer, T.E.Edwards. Crystal Structure of Thiamine-Monophosphate Kinase From Stenotrophomonas Maltophilia K279A To Be Published.
Page generated: Tue Oct 8 14:50:56 2024

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