Sodium in PDB 6vel: Crystal Structure of Human E-Cadherin Bound By Mouse Monoclonal Antibody 66E8FAB

The structure of Crystal Structure of Human E-Cadherin Bound By Mouse Monoclonal Antibody 66E8FAB, PDB code: 6vel was solved by Seattle Structural Genomics Center For Infectious Disease, Seattlestructural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.54 / 2.65
Space group	P 31 2 1
Cell size a, b, c (Å), α, β, γ (°)	142.170, 142.170, 90.320, 90.00, 90.00, 120.00
R / Rfree (%)	18.3 / 23.3

The structure of Crystal Structure of Human E-Cadherin Bound By Mouse Monoclonal Antibody 66E8FAB also contains other interesting chemical elements:

Calcium

(Ca)

2 atoms

The binding sites of Sodium atom in the Crystal Structure of Human E-Cadherin Bound By Mouse Monoclonal Antibody 66E8FAB (pdb code 6vel). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Human E-Cadherin Bound By Mouse Monoclonal Antibody 66E8FAB, PDB code: 6vel:

Sodium binding site 1 out of 1 in the Crystal Structure of Human E-Cadherin Bound By Mouse Monoclonal Antibody 66E8FAB


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Human E-Cadherin Bound By Mouse Monoclonal Antibody 66E8FAB within 5.0Å range: probe atom residue distance (Å) B Occ C:Na405 b:48.9 occ:1.00 OD1 C:ASP237 2.2 54.7 1.0 OE1 C:GLU112 2.4 64.2 1.0 O C:GLN202 2.4 62.0 1.0 OD1 C:ASP201 2.4 61.2 1.0 OD1 C:ASP204 2.4 51.6 1.0 OE2 C:GLU170 2.6 73.9 1.0 OE1 C:GLU170 2.6 68.1 1.0 CD C:GLU170 2.9 70.9 1.0 CG C:ASP237 3.3 54.6 1.0 CG C:ASP204 3.3 48.0 1.0 CG C:ASP201 3.4 58.5 1.0 CD C:GLU112 3.4 65.1 1.0 C C:GLN202 3.5 53.5 1.0 OD2 C:ASP204 3.7 53.4 1.0 N C:GLN202 3.7 48.8 1.0 OE2 C:GLU112 3.8 70.7 1.0 CA C:CA404 3.9 54.1 1.0 OD2 C:ASP201 3.9 57.3 1.0 OD1 C:ASN205 4.1 51.3 1.0 N C:ASP204 4.1 45.0 1.0 OD2 C:ASP237 4.1 47.8 1.0 CB C:ASP237 4.2 47.3 1.0 CA C:GLN202 4.2 52.4 1.0 CG C:GLU170 4.4 68.9 1.0 NE C:ARG169 4.4 55.7 1.0 CA C:ASP237 4.5 50.0 1.0 CB C:ASP204 4.5 48.6 1.0 CB C:ASP201 4.6 58.5 1.0 CA C:ASP201 4.6 52.4 1.0 N C:ASN203 4.6 50.5 1.0 C C:ASP201 4.6 51.1 1.0 CG C:GLU112 4.8 62.5 1.0 CA C:ASP204 4.8 51.5 1.0 CA C:ASN203 4.8 47.9 1.0 CB C:GLN202 4.9 57.6 1.0 CB C:ARG169 4.9 66.1 1.0 C C:ASN203 5.0 47.4 1.0

M.J.Bolejack, J.Abendroth, A.Y.Maker, B.M.Gumbiner, D.D.Lorimer, P.S.Horanyi, T.E.Edwards. Crystal Structure of Human E-Cadherin Bound By Mouse Monoclonal Antibody 66E8FAB To Be Published.