Sodium in PDB 6pvn: Cryo-Em Structure of Mouse TRPV3-Y564A in Putative Sensitized State at 4 Degrees Celsius

The binding sites of Sodium atom in the Cryo-Em Structure of Mouse TRPV3-Y564A in Putative Sensitized State at 4 Degrees Celsius (pdb code 6pvn). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Cryo-Em Structure of Mouse TRPV3-Y564A in Putative Sensitized State at 4 Degrees Celsius, PDB code: 6pvn:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Cryo-Em Structure of Mouse TRPV3-Y564A in Putative Sensitized State at 4 Degrees Celsius


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Cryo-Em Structure of Mouse TRPV3-Y564A in Putative Sensitized State at 4 Degrees Celsius within 5.0Å range: probe atom residue distance (Å) B Occ A:Na801 b:37.1 occ:1.00 CA C:GLY638 3.1 38.2 1.0 CA A:GLY638 3.1 37.8 1.0 CA D:GLY638 3.1 38.2 1.0 CA B:GLY638 3.1 38.0 1.0 N B:GLY638 4.0 38.0 1.0 N C:GLY638 4.0 38.2 1.0 N A:GLY638 4.0 37.8 1.0 N D:GLY638 4.0 38.2 1.0 C C:GLY638 4.2 38.2 1.0 C D:GLY638 4.2 38.2 1.0 C A:GLY638 4.2 37.8 1.0 C B:GLY638 4.2 38.0 1.0 N C:LEU639 4.6 51.0 1.0 N D:LEU639 4.6 51.0 1.0 N A:LEU639 4.6 51.4 1.0 N B:LEU639 4.7 51.8 1.0 C B:ILE637 4.9 32.4 1.0

Sodium binding site 2 out of 2 in the Cryo-Em Structure of Mouse TRPV3-Y564A in Putative Sensitized State at 4 Degrees Celsius


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Cryo-Em Structure of Mouse TRPV3-Y564A in Putative Sensitized State at 4 Degrees Celsius within 5.0Å range:

A.K.Singh, L.L.Mcgoldrick, L.Demirkhanyan, M.Leslie, E.Zakharian, A.I.Sobolevsky. Structural Basis of Temperature Sensation By the Trp Channel TRPV3. Nat.Struct.Mol.Biol. V. 26 994 2019.
ISSN: ESSN 1545-9985
PubMed: 31636415
DOI: 10.1038/S41594-019-0318-7