Sodium in PDB 6nu7: Structure of Sucrose-6-Phosphate Hydrolase From Lactobacillus Gasseri

All present enzymatic activity of Structure of Sucrose-6-Phosphate Hydrolase From Lactobacillus Gasseri:
3.2.1.26;

The structure of Structure of Sucrose-6-Phosphate Hydrolase From Lactobacillus Gasseri, PDB code: 6nu7 was solved by M.Z.T.Lima, J.R.C.Muniz, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.02 / 1.90
Space group	P 4 21 2
Cell size a, b, c (Å), α, β, γ (°)	103.149, 103.149, 101.978, 90.00, 90.00, 90.00
R / Rfree (%)	16.6 / 20.3

The binding sites of Sodium atom in the Structure of Sucrose-6-Phosphate Hydrolase From Lactobacillus Gasseri (pdb code 6nu7). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Structure of Sucrose-6-Phosphate Hydrolase From Lactobacillus Gasseri, PDB code: 6nu7:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Structure of Sucrose-6-Phosphate Hydrolase From Lactobacillus Gasseri


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of Sucrose-6-Phosphate Hydrolase From Lactobacillus Gasseri within 5.0Å range: probe atom residue distance (Å) B Occ A:Na505 b:14.6 occ:1.00 OD1 A:ASN298 2.3 4.7 1.0 O A:HOH821 2.5 8.4 1.0 O A:HOH1096 2.7 28.9 1.0 O A:HOH1088 2.7 35.1 1.0 O A:HOH610 3.2 25.1 1.0 CG A:ASN298 3.3 4.9 1.0 ND2 A:ASN298 3.5 6.0 1.0 O A:HOH1031 4.1 20.5 1.0 O A:ASP296 4.3 7.4 1.0 CB A:ASN298 4.7 3.8 1.0 O A:HOH1089 4.8 37.6 1.0 O A:HOH1073 4.8 26.2 1.0 O A:HOH1102 4.9 23.9 1.0 N A:ASN298 4.9 4.9 1.0 C A:GLY297 4.9 5.4 1.0 O A:GLY297 5.0 5.6 1.0 CA A:ASN298 5.0 4.3 1.0

Sodium binding site 2 out of 2 in the Structure of Sucrose-6-Phosphate Hydrolase From Lactobacillus Gasseri


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Structure of Sucrose-6-Phosphate Hydrolase From Lactobacillus Gasseri within 5.0Å range: probe atom residue distance (Å) B Occ A:Na506 b:15.8 occ:1.00 O A:HOH973 2.7 9.6 1.0 O A:VAL417 2.7 5.2 1.0 NE A:ARG410 2.9 5.5 1.0 O A:GLY422 2.9 4.9 1.0 CA A:ALA423 3.4 7.0 1.0 NH2 A:ARG410 3.5 4.0 1.0 O A:HOH828 3.5 5.0 1.0 CZ A:ARG410 3.6 4.5 1.0 C A:GLY422 3.7 5.3 1.0 CG A:ARG410 3.8 5.0 1.0 C A:VAL417 3.8 5.5 1.0 CD A:ARG410 3.9 5.3 1.0 N A:ALA423 3.9 6.1 1.0 CB A:ALA423 4.0 7.4 1.0 N A:VAL417 4.2 6.0 1.0 CE2 A:PHE284 4.3 4.4 1.0 O A:ASN418 4.3 4.8 1.0 CA A:VAL417 4.4 5.5 1.0 CB A:VAL417 4.4 4.0 1.0 CA A:PRO419 4.4 6.8 1.0 CD2 A:PHE284 4.4 5.3 1.0 C A:ALA423 4.4 7.2 1.0 C A:ASN418 4.5 5.3 1.0 O A:HOH1239 4.6 17.5 1.0 N A:PRO419 4.7 5.2 1.0 O A:ALA423 4.7 7.3 1.0 O A:HOH880 4.8 16.1 1.0 NH1 A:ARG410 4.9 3.6 1.0 N A:ASN418 4.9 5.2 1.0

M.Z.T.Lima, J.R.C.Muniz. Structure of Sucrose-6-Phosphate Hydrolase From Lactobacillus Gasseri To Be Published.