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Sodium in PDB 6nok: The X-Ray Crystal Structure of Streptococcus Pneumoniae Fatty Acid Kinase (Fak) B1 Protein Loaded with Myristic Acid (C14:0) to 1.69 Angstrom Resolution

Protein crystallography data

The structure of The X-Ray Crystal Structure of Streptococcus Pneumoniae Fatty Acid Kinase (Fak) B1 Protein Loaded with Myristic Acid (C14:0) to 1.69 Angstrom Resolution, PDB code: 6nok was solved by M.G.Cuypers, J.M.Gullett, C.Subramanian, S.W.White, C.O.Rock, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.19 / 1.69
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 37.556, 66.324, 46.953, 90.00, 95.75, 90.00
R / Rfree (%) 15.2 / 20

Sodium Binding Sites:

The binding sites of Sodium atom in the The X-Ray Crystal Structure of Streptococcus Pneumoniae Fatty Acid Kinase (Fak) B1 Protein Loaded with Myristic Acid (C14:0) to 1.69 Angstrom Resolution (pdb code 6nok). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the The X-Ray Crystal Structure of Streptococcus Pneumoniae Fatty Acid Kinase (Fak) B1 Protein Loaded with Myristic Acid (C14:0) to 1.69 Angstrom Resolution, PDB code: 6nok:

Sodium binding site 1 out of 1 in 6nok

Go back to Sodium Binding Sites List in 6nok
Sodium binding site 1 out of 1 in the The X-Ray Crystal Structure of Streptococcus Pneumoniae Fatty Acid Kinase (Fak) B1 Protein Loaded with Myristic Acid (C14:0) to 1.69 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of The X-Ray Crystal Structure of Streptococcus Pneumoniae Fatty Acid Kinase (Fak) B1 Protein Loaded with Myristic Acid (C14:0) to 1.69 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na402

b:46.3
occ:1.00
O A:THR222 2.2 28.6 1.0
O A:HOH717 2.4 43.3 1.0
O A:GLY225 2.5 25.1 1.0
C A:THR222 3.4 28.3 1.0
C A:GLY225 3.6 28.3 1.0
C A:ALA223 3.9 34.0 1.0
CA A:ALA223 3.9 32.8 1.0
O A:ALA223 3.9 35.9 1.0
N A:GLY225 4.0 34.1 1.0
N A:ALA223 4.1 30.9 1.0
O A:HOH536 4.2 40.0 1.0
OG1 A:THR222 4.3 21.3 1.0
CB A:THR222 4.3 22.3 1.0
CA A:GLY225 4.3 32.8 1.0
CD1 A:TYR227 4.4 17.9 1.0
CA A:THR222 4.4 24.7 1.0
N A:SER224 4.5 35.2 1.0
N A:GLN226 4.7 23.6 1.0
C A:SER224 4.7 38.7 1.0
CA A:GLN226 4.8 21.8 1.0

Reference:

M.G.Cuypers, J.M.Gullett, C.Subramanian, S.W.White, C.O.Rock. The X-Ray Crystal Structure of Streptococcus Pneumoniae Fatty Acid Kinase (Fak) B1 Protein Loaded with Myristic Acid (C14:0) to 1.69 Angstrom Resolution To Be Published.
Page generated: Tue Oct 8 12:20:08 2024

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