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Sodium in PDB 6msx: Iron Containing Ferritin at 1.43A

Protein crystallography data

The structure of Iron Containing Ferritin at 1.43A, PDB code: 6msx was solved by A.Blackburn, S.H.Partowmah, H.M.Brennan, K.E.Mestizo, C.D.Stivala, J.Petreczky, A.Perez, A.Horn, S.Mcsweeney, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 1.43
Space group F 4 3 2
Cell size a, b, c (Å), α, β, γ (°) 181.590, 181.590, 181.590, 90.00, 90.00, 90.00
R / Rfree (%) 15.7 / 17.2

Other elements in 6msx:

The structure of Iron Containing Ferritin at 1.43A also contains other interesting chemical elements:

Cadmium (Cd) 5 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Iron Containing Ferritin at 1.43A (pdb code 6msx). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Iron Containing Ferritin at 1.43A, PDB code: 6msx:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in 6msx

Go back to Sodium Binding Sites List in 6msx
Sodium binding site 1 out of 2 in the Iron Containing Ferritin at 1.43A


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Iron Containing Ferritin at 1.43A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na207

b:33.7
occ:1.00
O A:HOH406 1.9 39.7 1.0
NE2 A:HIS132 2.3 57.6 1.0
CE1 A:HIS132 2.8 65.9 1.0
CD2 A:HIS132 3.5 52.2 1.0
O A:HOH434 3.6 54.4 1.0
ND1 A:HIS132 4.0 52.5 1.0
CG A:HIS132 4.4 46.7 1.0
NH2 A:ARG64 4.9 70.6 1.0

Sodium binding site 2 out of 2 in 6msx

Go back to Sodium Binding Sites List in 6msx
Sodium binding site 2 out of 2 in the Iron Containing Ferritin at 1.43A


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Iron Containing Ferritin at 1.43A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na208

b:49.0
occ:1.00
O A:HOH314 1.9 46.4 1.0
OE1 A:GLU56 2.4 58.1 1.0
OE1 A:GLU53 2.5 69.5 1.0
OE2 A:GLU53 2.8 79.7 1.0
CD A:GLU53 3.0 58.5 1.0
CD A:GLU56 3.2 55.8 1.0
OE2 A:GLU56 3.4 64.4 1.0
O A:HOH388 4.2 39.6 0.5
CG A:GLU53 4.6 39.3 1.0
CG A:GLU56 4.7 39.2 1.0
CB A:GLU56 5.0 29.3 1.0

Reference:

A.Blackburn, S.H.Partowmah, H.M.Brennan, K.E.Mestizo, C.D.Stivala, J.Petreczky, A.Perez, A.Horn, S.Mcsweeney. A Simple Technique to Improve Microcrystals Using Gel Exclusion of Nucleation Inducing Elements To Be Published.
Page generated: Tue Oct 8 12:01:50 2024

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