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Sodium in PDB 6lbl: Crystal Structure of Imp-1 Metallo-Beta-Lactamase in Complex with NO9 Inhibitor

Enzymatic activity of Crystal Structure of Imp-1 Metallo-Beta-Lactamase in Complex with NO9 Inhibitor

All present enzymatic activity of Crystal Structure of Imp-1 Metallo-Beta-Lactamase in Complex with NO9 Inhibitor:
3.5.2.6;

Protein crystallography data

The structure of Crystal Structure of Imp-1 Metallo-Beta-Lactamase in Complex with NO9 Inhibitor, PDB code: 6lbl was solved by J.Wachino, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.39 / 1.68
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 35.920, 56.610, 100.620, 90.00, 90.00, 90.00
R / Rfree (%) 15.8 / 20.8

Other elements in 6lbl:

The structure of Crystal Structure of Imp-1 Metallo-Beta-Lactamase in Complex with NO9 Inhibitor also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Imp-1 Metallo-Beta-Lactamase in Complex with NO9 Inhibitor (pdb code 6lbl). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Imp-1 Metallo-Beta-Lactamase in Complex with NO9 Inhibitor, PDB code: 6lbl:

Sodium binding site 1 out of 1 in 6lbl

Go back to Sodium Binding Sites List in 6lbl
Sodium binding site 1 out of 1 in the Crystal Structure of Imp-1 Metallo-Beta-Lactamase in Complex with NO9 Inhibitor


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Imp-1 Metallo-Beta-Lactamase in Complex with NO9 Inhibitor within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na303

b:38.2
occ:1.00
 O A:ILE94 2.7 24.8 1.0
O A:HOH517 2.7 38.5 1.0
O A:HOH603 2.8 41.5 1.0
OG1 A:THR115 2.8 27.3 1.0
ND2 A:ASN90 3.1 19.6 1.0
CG2 A:THR115 3.2 29.1 1.0
C A:ILE94 3.5 24.9 1.0
CB A:THR115 3.5 24.8 1.0
CA A:PRO95 3.7 22.2 1.0
N A:THR96 3.7 20.6 1.0
CA A:ASN90 3.8 25.0 1.0
OG1 A:THR96 3.9 19.9 1.0
N A:PRO95 3.9 22.6 1.0
CG A:ASN90 3.9 25.4 1.0
C A:PRO95 4.1 24.5 1.0
CB A:ASN90 4.3 24.6 1.0
N A:ILE94 4.3 27.5 1.0
O A:ASN90 4.5 26.4 1.0
CG2 A:THR96 4.5 19.6 1.0
N A:ASN90 4.6 21.2 1.0
CB A:THR96 4.6 18.8 1.0
C A:SER93 4.6 28.5 1.0
CA A:ILE94 4.6 26.7 1.0
O A:HOH505 4.6 36.3 1.0
C A:ASN90 4.7 27.1 1.0
CA A:THR96 4.8 19.0 1.0
O A:LEU89 4.8 23.9 1.0
OD1 A:ASN90 4.8 27.3 1.0
CA A:SER93 4.9 28.8 1.0
CA A:THR115 4.9 20.1 1.0
C A:LEU89 4.9 20.6 1.0

Reference:

J.Wachino, J.Wachino. N/A N/A.
Page generated: Tue Oct 8 11:37:12 2024

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